plant surface microbiology.pdf

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444 Thomas F.C. Chin-A-Woeng et al. Ballance DJ, Buxton FP, Turner G (1983) Transformation of Aspergillus nidulans by the orotidine-5¢-phosphate decarboxylase gene of Neurospora crassa. Biochem Biophys Res Commun 112:284–289 Beckman CH (1987) The nature of wilt diseases of <strong>plant</strong>s. The American Phytopathological Society Press, Saint Paul, MN Bloemberg GV, O’Toole GA, Lugtenberg BJJ, Kolter R (1997) Green fluorescent protein as a marker for Pseudomonas spp. Appl Environ Microbiol 63:4543–4551 Bloemberg GV,Wijfjes AH, Lamers GE, Stuurman N, Lugtenberg BJ (2000) Simultaneous imaging of Pseudomonas fluorescens WCS365 populations expressing three different autofluorescent proteins in the rhizosphere: new perspectives for studying microbial communities. Mol Plant-Microbe Interact 13:1170–1176 Bochner BR (1989) Sleuthing out bacterial identities. Nature 339:157–158 Brooke JB, Glick BS (2002) Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed). Nat Biotechnol 20:83–87 Brown JW, Hunt DA, Pace NR (1990) Nucleotide sequence of the 10Sa RNA gene of the beta-purple eubacterium Alcaligenes eutrophus. Nucleic Acids Res 18:2820 Burlage RS, Yang ZK, Mehlhorn T (1996) A transposon for green fluorescent protein transcriptional fusions: application for bacterial transport experiments. Gene 173:53–58 Chalfie M, Tu Y, Euskirchen G, Ward WW, Prasher DC (1994) Green fluorescent protein as a marker for gene expression. Science 263:802–805 Chin-A-Woeng TFC, Bloemberg GV, van der Bij AJ, van der Drift KMGM, Schripsema J, Kroon B, Scheffer RJ, Keel C, Bakker PAHM, Tichy HV, de Bruijn FJ, Thomas-Oates JE, Lugtenberg BJJ (1998) Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Mol Plant-Microbe Interact 11:1069–1077 Chiu WL, Niwa Y, Zeng W, Hirano T, Kobayashi H, Sheen J (1996) Engineered GFP as a vital reporter in <strong>plant</strong>s. Curr Biol 6:325–330 Cody CW, Prasher DC, Westler WM, Prendergast FG, Ward WW (1993) Chemical structure of the hexapeptide chromophore of the Aequorea green-fluorescent protein. Biochemistry 32:1212–1218 Cormack BP, Valdivia RH, Falkow S (1996) FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173:33–38 Cowan SE, Gilbert E, Khlebnikov A, Keasling JD (2000) Dual labeling with green fluorescent proteins for confocal microscopy. Appl Environ Microbiol 66:413–418 Craig NL (1989) Transposon Tn7. In: Berg DE, Howe MM (eds) Mobile DNA. American Society for Microbiology, Washington, pp 211–225 Crameri A, Whitehorn EA, Tate E, Stemmer WP (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat Biotechnol 14:315–319 Cuppers HGAM, Oomes S, Brul S (1997) A model for the combined effects of temperature and salt concentration on growth rate of food spoilage molds. Appl Environ Microbiol 63:3764–3769 Dandie CE, Thomas SM, McClure NC (2001) Comparison of a range of green fluorescent protein-tagging vectors for monitoring a microbial inoculant in soil. Lett Appl Microbiol 32:26–30 Daubner SC, Astorga AM, Leisman GB, Baldwin TO (1987) Yellow light emission of Vibrio fischeri strain Y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proc Natl Acad Sci USA 84:8912–8916 de Lorenzo V, Timmis KN (1994) Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol 235:386–405
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PLANT SURFACE MICROBIOLOGY
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Professor Dr. Ajit Varma Director A
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VI ology. The basic concepts in pla
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VIII Contents 6.1 Abiotic Factors .
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X Section B Contents 7 The Function
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XII 3 Impact of Genetically Modifie
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XIV 4.9 Arabidopsis thaliana . . .
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XVI Contents 4.1 Diversity of Arbus
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XVIII 6.2 Role and Properties of Gl
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XX Contents 4.1 Isolated Cuticles a
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XXII Contents 6.5 CMEIAS v. 3.0: In
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Contributors Abbott, Lynette K. Sch
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Ghimire, Sita R. Centre for Researc
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Meyer, William Department of Plant
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Tripathi,K.K. Department of Biotech
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2 Ajit Varma et al. technical diffi
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4 Ajit Varma et al. prowazekii with
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6 Ajit Varma et al. parasite on oth
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8 Ajit Varma et al. interaction wit
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10 Ajit Varma et al. mative, quanti
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2 Root Colonisation Following Seed
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Fig. 1. Colonisation tube system (f
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3.4 Seed Inoculation Seeds are plac
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selection using GFP-expressing bact
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plant roots from the sand, these ca
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tant for colonisation, but neither
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6.2 Biotic Factors 2 Root Colonisat
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36 CH 4 Ralf Conrad O 2 CH 4 methan
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38 Ralf Conrad Finally, aquatic pla
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40 Ralf Conrad Fig. 3. Emission of
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42 Ralf Conrad The general coloniza
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44 Ralf Conrad acceptor. However, l
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46 Ralf Conrad Brioukhanov A, Netru
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48 Ralf Conrad King GM, Garey MA (1
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50 Ralf Conrad Yao H, Conrad R (200
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52 Galdino Andrade or the transform
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54 Galdino Andrade and 2-15 % prote
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56 Galdino Andrade organic nitrogen
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58 SO4 Galdino Andrade Assimilatory
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60 Galdino Andrade phosphate compou
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62 Galdino Andrade In our laborator
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64 Galdino Andrade Fig. 9. Bacteria
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66 Galdino Andrade Plants Carbon De
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68 Galdino Andrade organic phosphat
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5 Diversity and Functions of Soil M
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6 Signalling in the Rhizobia-Legume
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acid, ethylene and jasmonates are i
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increases the activity of the bdhA
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which are perhaps intermediates in
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122 Galdino Andrade Some studies ha
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124 Galdino Andrade Nutrient limita
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126 Galdino Andrade significant qua
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128 Galdino Andrade decrease in the
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130 Galdino Andrade References and
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132 Galdino Andrade Smith RA, Couch
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134 Bernard R. Glick and Donna M. P
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146 Lukas Schreiber, Ursula Krimm a
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158 James F. White Jr. et al. endop
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160 James F. White Jr. et al. 4.3 P
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162 James F. White Jr. et al. Fig.
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164 James F. White Jr. et al. leaf
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166 James F. White Jr. et al. cutic
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168 James F. White Jr. et al. 6.3 M
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170 James F. White Jr. et al. Fig.
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172 James F. White Jr. et al. form
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174 James F. White Jr. et al. itive
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176 James F. White Jr. et al. Clay
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178 James F. White Jr. et al. White
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180 Michael Kaldorf et al. poplar,
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182 Table 1: Studies assessing the
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184 Michael Kaldorf et al. 1995). S
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186 Michael Kaldorf et al. chitinas
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188 Michael Kaldorf et al. resistan
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190 Michael Kaldorf et al. the GPD/
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192 Michael Kaldorf et al. Referenc
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194 Michael Kaldorf et al. Hoffmann
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196 Michael Kaldorf et al. van Rhij
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198 Rüdiger Hampp and Andreas Maie
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212 Ingrid Kottke Fig. 1. Ectomycor
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214 Ingrid Kottke nificant structur
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216 d Ingrid Kottke rcc ph rccw ccw
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218 Ingrid Kottke Fig. 6. Scheme il
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220 Ingrid Kottke Picea mariana Mil
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222 Ingrid Kottke suberin digestion
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224 Ingrid Kottke When dissolving t
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226 Ingrid Kottke Oh KI, Melville L
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228 respect to soral morphology,tel
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230 Robert Bauer and Franz Oberwink
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238 Giang Huong Pham et al. The fun
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240 Giang Huong Pham et al. reactio
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242 Giang Huong Pham et al. Fig. 5.
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244 Giang Huong Pham et al. Fig. 6.
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246 Treated roots were colonized by
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248 Giang Huong Pham et al. Fig. 9a
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250 Giang Huong Pham et al. Fig. 11
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252 Giang Huong Pham et al. 4.6 Tim
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260 Giang Huong Pham et al. longed
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264 Giang Huong Pham et al. Referen
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16 Cellular Basidiomycete-Fungus In
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Fig. 1. Hypha of Colacogloea peniop
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4.2 Fusion-Interaction 16 Cellular
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Fig. 12. Transverse section through
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282 Sita R. Ghimire and Kevin D. Hy
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294 Marjatta Raudaskoski, Mika Tark
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19 Functional Diversity of Arbuscul
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352 José-Miguel Barea et al. 1994)
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354 José-Miguel Barea et al. 1992;
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356 José-Miguel Barea et al. 5 Rea
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358 José-Miguel Barea et al. 1992;
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360 José-Miguel Barea et al. AM-de
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362 José-Miguel Barea et al. pound
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364 José-Miguel Barea et al. Berta
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366 José-Miguel Barea et al. Giani
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368 José-Miguel Barea et al. Lynch
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370 José-Miguel Barea et al. Toro
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21 Carbohydrates and Nitrogen: Nutr
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394 A. Javelle et al. 1.2 Nitrogen
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396 A. Javelle et al. genes were re
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398 A. Javelle et al. gest that myc
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400 A. Javelle et al. 3.3 Isolation
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402 A. Javelle et al. lular Gln amo
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404 A. Javelle et al. In Paxillus i
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406 A. Javelle et al. capabilities
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408 A. Javelle et al. as two other
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410 A. Javelle et al. Glu. Glutamin
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412 A. Javelle et al. Table 1. Rela
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414 A. Javelle et al. catalysed by
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416 A. Javelle et al. GLU2 is expre
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Page 898: 23 Visualisation of Rhizosphere Int
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Page 928: 446 Thomas F.C. Chin-A-Woeng et al.
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Page 936: 450 Anton Hartmann et al. The rhizo
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Page 944: 454 Anton Hartmann et al. B D
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Page 952: 458 Anton Hartmann et al. (see abov
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Page 968: 466 Anton Hartmann et al. Gorlach K
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25 Methods for Analysing the Intera
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25 Analysing Interactions between M
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into the nutrition solution inside
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An example for the change in water
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490 Donna M. Penrose and Bernard R.
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494 Absorbance at 540 nm 1.6 1.4 1.
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504 Frank B. Dazzo electron, and fi
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506 Frank B. Dazzo the microsymbion
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508 Frank B. Dazzo degrade the bact
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510 Frank B. Dazzo Fig. 4. Phase co
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512 Frank B. Dazzo Fig. 5. Symbiont
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514 Frank B. Dazzo microscopy. The
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516 Frank B. Dazzo the rhizobial ex
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518 Frank B. Dazzo In contrast, qua
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520 Frank B. Dazzo biological activ
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522 Frank B. Dazzo NBD-labeled CLOS
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524 Frank B. Dazzo cated that the s
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526 Frank B. Dazzo to introduce pol
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528 Frank B. Dazzo response is less
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530 Frank B. Dazzo mizing the gyror
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532 Frank B. Dazzo including its re
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534 Frank B. Dazzo Table 1. Quantit
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536 Frank B. Dazzo and eukaryotic c
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538 Frank B. Dazzo Table 2. In situ
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540 Frank B. Dazzo involvement of t
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542 Frank B. Dazzo Fig. 16. Geostat
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544 Frank B. Dazzo the power of geo
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546 Frank B. Dazzo Dazzo FB, Hollin
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548 Frank B. Dazzo erney MJ, Stetze
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550 Frank B. Dazzo van Workum WAT,
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552 Emanuele G. Biondi 2 Materials
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554 Emanuele G. Biondi eral species
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556 - Low intensity of the bands: i
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558 Emanuele G. Biondi CCA ATT CT-3
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560 Emanuele G. Biondi Experimental
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562 Emanuele G. Biondi two strains
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564 Emanuele G. Biondi References a
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29 Functional Genomic Approaches fo
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30 Axenic Culture of Symbiotic Fung
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9 Phosphatic Nutrients 30 Axenic Cu
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Modified aspergillus medium (Varma
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616 Subject Index Antifungal activi
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618 Subject Index Cryosection 317 C
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620 Subject Index Fusarium sp. 73,
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622 Subject Index Leaf surface colo
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624 Subject Index Penicillium sp. 7
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626 Subject Index Salmon sperm DNA
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628 Subject Index Y Yellow fluoresc
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