plant surface microbiology.pdf

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618 Subject Index Cryosection 317 Cultivation 595 Culturability 449 Cunninghamella 240 C. echinulata 597 Cuticle 211, 221, 471 Cuticular penetration 481, 482 Cuticular permeability 149, 153, 479 Cuticular transport 479 Cuticular wax 147, 473, 474 Cu-Zn Superoxide dismutase 580 Cyan fluorescent protein (CFP) 441 Cyathus 85 Cyclic glucans 109 Cyclic trihydroxamate 90 Cyclin 315 Cycloheximide 433, 440 Cylindrocarpon sp. 201 Cymbopogon martinii 243 32p-dCTP 585, 588 Cynodon dactylon 595 Cyperaceae 76 Cysteine-rich proteins 219 Cytidindeaminase 580 Cytokinin 88, 89, 170 Cytoplasmic streaming 300 Cytoskeletal organization 308 Cytoskeleton 6, 505, 516, 527, 529 Czapek-Dox medium 435 D Dactylorhiza majalis 243 D. incarnata 243 D. maculata 243 D. majalis 246 D. purpurella 243 D. fuchi 243 D. purpurella 246 Dalbergia sissoo 252 Damping off seedling 157 DAPI 458, 594 Darkfield microscopy 525, 527 Daucus carota 243, 259 dCTP 582 Deciduous trees 596 Decomposer 74 Decomposition 74 Dehydrogenisation 54 Deionized H20 574 Deleterious rhizosphere organisms 352 De-mineral 65 Denaturant gradient gel electrophoresis (DGGE) 75 Dendrobium crumenatum 580 Denhardt’s solution 586 Denitrifiers 72 Denitrifying bateria 72 Dephosphorylated l TriplEx2 vector 574 Depolymerisation 54 Derxia sp. 83 Desferriform 89 Desmostachya sp. 77 Desulfovibrio sp. 73, 83 DGGE-finger printing 461, 462 dGTP 582 Diazotrophic baterial 157 Diglycosyl diacylglycerol glycolipid 508 Dikaryotic hyphae 296 Di-potassium hydrogen phosphate 606 Discosoma sp. 441 Disease index 27 Diterpenoid acids 88 Differential expression 590 cDNA 569, 573 – clones 568 – DNA library 569, 577 – DNA polymerase mix 569 – DNA probes 584, 585, 588 – DNA synthesis 569 DNA concentration 553 DNA polymerase 572 DNA sequencher 579 16s rDNA sequense analysis 8 DNA-hybridization 75 DNAse 569 dNTPs 569, 578, 584 Dolipores 595 Double-Stranded adapters 552 Double-stranded cDNA 569 Douglas fir 414, 415 Drosophila melanogaster 580 Dsc DNA 585 DsRed 441, 442, 456 DTT 584 Dual colour imaging 440 Dynactin complex 312 DynamicET cycle sequencing kit 579 Dynein 310, 312 E Ecological significance 393 Ecological specificity 332
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PLANT SURFACE MICROBIOLOGY
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Professor Dr. Ajit Varma Director A
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VI ology. The basic concepts in pla
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VIII Contents 6.1 Abiotic Factors .
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X Section B Contents 7 The Function
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XII 3 Impact of Genetically Modifie
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XIV 4.9 Arabidopsis thaliana . . .
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XVI Contents 4.1 Diversity of Arbus
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XVIII 6.2 Role and Properties of Gl
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XX Contents 4.1 Isolated Cuticles a
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XXII Contents 6.5 CMEIAS v. 3.0: In
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Contributors Abbott, Lynette K. Sch
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Ghimire, Sita R. Centre for Researc
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Meyer, William Department of Plant
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Tripathi,K.K. Department of Biotech
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2 Ajit Varma et al. technical diffi
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4 Ajit Varma et al. prowazekii with
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6 Ajit Varma et al. parasite on oth
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8 Ajit Varma et al. interaction wit
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10 Ajit Varma et al. mative, quanti
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2 Root Colonisation Following Seed
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Fig. 1. Colonisation tube system (f
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3.4 Seed Inoculation Seeds are plac
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selection using GFP-expressing bact
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plant roots from the sand, these ca
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tant for colonisation, but neither
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6.2 Biotic Factors 2 Root Colonisat
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36 CH 4 Ralf Conrad O 2 CH 4 methan
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38 Ralf Conrad Finally, aquatic pla
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40 Ralf Conrad Fig. 3. Emission of
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42 Ralf Conrad The general coloniza
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44 Ralf Conrad acceptor. However, l
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46 Ralf Conrad Brioukhanov A, Netru
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48 Ralf Conrad King GM, Garey MA (1
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50 Ralf Conrad Yao H, Conrad R (200
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52 Galdino Andrade or the transform
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54 Galdino Andrade and 2-15 % prote
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56 Galdino Andrade organic nitrogen
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58 SO4 Galdino Andrade Assimilatory
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60 Galdino Andrade phosphate compou
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62 Galdino Andrade In our laborator
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64 Galdino Andrade Fig. 9. Bacteria
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66 Galdino Andrade Plants Carbon De
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68 Galdino Andrade organic phosphat
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5 Diversity and Functions of Soil M
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6 Signalling in the Rhizobia-Legume
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acid, ethylene and jasmonates are i
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increases the activity of the bdhA
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which are perhaps intermediates in
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122 Galdino Andrade Some studies ha
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124 Galdino Andrade Nutrient limita
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126 Galdino Andrade significant qua
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128 Galdino Andrade decrease in the
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130 Galdino Andrade References and
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132 Galdino Andrade Smith RA, Couch
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134 Bernard R. Glick and Donna M. P
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146 Lukas Schreiber, Ursula Krimm a
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158 James F. White Jr. et al. endop
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160 James F. White Jr. et al. 4.3 P
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162 James F. White Jr. et al. Fig.
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164 James F. White Jr. et al. leaf
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166 James F. White Jr. et al. cutic
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168 James F. White Jr. et al. 6.3 M
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170 James F. White Jr. et al. Fig.
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172 James F. White Jr. et al. form
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174 James F. White Jr. et al. itive
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176 James F. White Jr. et al. Clay
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178 James F. White Jr. et al. White
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180 Michael Kaldorf et al. poplar,
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182 Table 1: Studies assessing the
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184 Michael Kaldorf et al. 1995). S
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186 Michael Kaldorf et al. chitinas
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188 Michael Kaldorf et al. resistan
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190 Michael Kaldorf et al. the GPD/
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192 Michael Kaldorf et al. Referenc
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194 Michael Kaldorf et al. Hoffmann
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196 Michael Kaldorf et al. van Rhij
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198 Rüdiger Hampp and Andreas Maie
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212 Ingrid Kottke Fig. 1. Ectomycor
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214 Ingrid Kottke nificant structur
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216 d Ingrid Kottke rcc ph rccw ccw
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218 Ingrid Kottke Fig. 6. Scheme il
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220 Ingrid Kottke Picea mariana Mil
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222 Ingrid Kottke suberin digestion
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224 Ingrid Kottke When dissolving t
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226 Ingrid Kottke Oh KI, Melville L
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228 respect to soral morphology,tel
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230 Robert Bauer and Franz Oberwink
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238 Giang Huong Pham et al. The fun
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240 Giang Huong Pham et al. reactio
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242 Giang Huong Pham et al. Fig. 5.
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244 Giang Huong Pham et al. Fig. 6.
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246 Treated roots were colonized by
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248 Giang Huong Pham et al. Fig. 9a
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250 Giang Huong Pham et al. Fig. 11
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252 Giang Huong Pham et al. 4.6 Tim
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260 Giang Huong Pham et al. longed
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264 Giang Huong Pham et al. Referen
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16 Cellular Basidiomycete-Fungus In
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Fig. 1. Hypha of Colacogloea peniop
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4.2 Fusion-Interaction 16 Cellular
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Fig. 12. Transverse section through
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282 Sita R. Ghimire and Kevin D. Hy
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294 Marjatta Raudaskoski, Mika Tark
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19 Functional Diversity of Arbuscul
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352 José-Miguel Barea et al. 1994)
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354 José-Miguel Barea et al. 1992;
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356 José-Miguel Barea et al. 5 Rea
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358 José-Miguel Barea et al. 1992;
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360 José-Miguel Barea et al. AM-de
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362 José-Miguel Barea et al. pound
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364 José-Miguel Barea et al. Berta
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366 José-Miguel Barea et al. Giani
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368 José-Miguel Barea et al. Lynch
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370 José-Miguel Barea et al. Toro
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21 Carbohydrates and Nitrogen: Nutr
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394 A. Javelle et al. 1.2 Nitrogen
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396 A. Javelle et al. genes were re
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398 A. Javelle et al. gest that myc
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400 A. Javelle et al. 3.3 Isolation
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402 A. Javelle et al. lular Gln amo
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404 A. Javelle et al. In Paxillus i
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406 A. Javelle et al. capabilities
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408 A. Javelle et al. as two other
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410 A. Javelle et al. Glu. Glutamin
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412 A. Javelle et al. Table 1. Rela
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414 A. Javelle et al. catalysed by
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416 A. Javelle et al. GLU2 is expre
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418 A. Javelle et al. gen to plants
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420 A. Javelle et al. (Hoshida et a
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422 A. Javelle et al. Bajwa R, Abua
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424 A. Javelle et al. Garnier A, Be
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426 A. Javelle et al. Limami A, Phi
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428 A. Javelle et al. Ritchie RJ, G
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23 Visualisation of Rhizosphere Int
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5 Microscope Analysis of Infection
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cells by hyphae. No penetration str
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24 Microbial Community Analysis in
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titative data about the community c
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3.5 Community Analysis by Fatty Aci
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472 Contactangle Daniel Knoll and L
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474 Daniel Knoll and Lukas Schreibe
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478 A cuticle B Daniel Knoll and Lu
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26 Quantifying the Impact of ACC De
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27 Applications of Quantitative Mic
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28 Analysis of Microbial Population
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- Primers for ITS amplification: FG
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6 ITS-RFLP analysis 28 Analysis of
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7 Statistical analysis 28 Analysis
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Software requirements - Scoring of
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568 Gopi K. Podila and Luisa Lanfra
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572 Kbp 5.1 - 2 - 1.3 - Gopi K. Pod
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574 Kbp 5.1 - 2 - 0.9 - Gopi K. Pod
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Page 1222: 596 Giang Huong Pham et al. Table 1
Page 1226: 598 Giang Huong Pham et al. nucleic
Page 1230: 600 Giang Huong Pham et al. days wi
Page 1234: 602 Giang Huong Pham et al. Table 3
Page 1238: 604 Giang Huong Pham et al. The mor
Page 1242: 606 phatase in addition to the cons
Page 1246: 608 H3BO3 1.55 MnSO . 4 H2O 0.85 Zn
Page 1250: 610 CuSO 4 . 5H2 O 0.25 CoCl 2 . H2
Page 1254: 612 Giang Huong Pham et al. wrinkle
Page 1258: Subject Index A AAD 590 Abies (fir)
Page 1262: Botanophila 171 Bradyrhizobium 73,
Page 1268: 620 Subject Index Fusarium sp. 73,
Page 1272: 622 Subject Index Leaf surface colo
Page 1276: 624 Subject Index Penicillium sp. 7
Page 1280: 626 Subject Index Salmon sperm DNA
Page 1284: 628 Subject Index Y Yellow fluoresc
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