plant surface microbiology.pdf

More documents

Recommendations

Info

626 Subject Index Salmon sperm DNA 585, 588 Salmonella typhimurium 439 Sapotaceae 76 Saprobes 69, 287 Saprophytic fungi 78 Saprotrophic 79 Scanning electron microscopy 507, 527 Scatter plot analysis 589 Schizophyllum commune 203, 590, 597 Schizosaccharomayces pombe 3,580, 590 Scleroderma citrinum 261 Sclerotinia homeocarpa 158 S. sclerotiorum 597 Sc. solani 597 Scutellospora gilmorei 248, 597 S. calospora 334 SDS 586 Sebacina vermifera 239 S. vermifera var senu 597 Secondary metabolites 288 Seed disinfection 15 Seed inoculation 17 Septin Spn3 590 Serratia 89 S. liquefaciens 456 Setaria italica 244, 245 Sfi I enzyme 573 Sheered hyphae 162 Shepherd’s crook 508, 509, 524 Short root 212, 297 Short root branching 315 Siderophores 88, 90, 202, 200 Signal molecules 106 Signal perception 111 Signal transduction 568 Sinorhizobium sp. 82 S. meliloti 3, 555 Small GTPases 305 SMART cDNA library construction kit 569 SMART cDNA synthesis kit 584 SMART III Oligonucleotide 569 SMART IV 584 Sodium alginate 79 Sodium hypochlorite 15 Solanum melongena 243, 248 S. xanthocarpum 77 Solidification 253 Sorghum vulgare 243 Spatial distribution of microbes 532–544 Spatial isolation 73 Specific efflux mechanisms 80 Spectrophotometer 569 Spermatia 165 Spilanthes calva 243, 248 Spinacia oleracea 255 Spitzenkörper 311 Spliceosome-associated protein 580 Sporocarps 200 Sporobolus sp. 77 Sporodochia 169, 170 Sporulation 255, 598 sscDNA 585, 588 sss (site-specific recombinase) 25 sta 21 Staphylococcus 200 S. hycius 90 Stomates 145 Straw 40 Streptomyces sp. 73, 82, 89 Streptoverticillium cinnamoneum 88 Styela plicata S 580 Suberin layer 214 Substrate utilization profile 463 Subunit G of vacuolar ATP synthase 580 Sucrose 602, 604 SUG1 subunit 8 590 Sugar regulation 377, 378 Suillus bovinus 199, 203 S. granulatus 201, 261 S. grevillei 200, 261 S. luteus 261 S. variegatus 597 Sulfate-reducers 72 Superscript II 569 Survival 245 Suspension 256 Symbionts 1 Symbiosis 60, 295, 567 Symbiosis-specific manner 79 Symbiosome membrane 99 Symbiotic communication 114 Symbiotic fungi 60 Symbiotic hyphal growth 306 Symptoms 242 SYMRK 99 Synchytrium sp. 88 Synergistic microbial interactions 360 T TAE agarose gel 583 TAE buffer 583
Page 2:
PLANT SURFACE MICROBIOLOGY
Page 6:
Professor Dr. Ajit Varma Director A
Page 10:
VI ology. The basic concepts in pla
Page 14:
VIII Contents 6.1 Abiotic Factors .
Page 18:
X Section B Contents 7 The Function
Page 22:
XII 3 Impact of Genetically Modifie
Page 26:
XIV 4.9 Arabidopsis thaliana . . .
Page 30:
XVI Contents 4.1 Diversity of Arbus
Page 34:
XVIII 6.2 Role and Properties of Gl
Page 38:
XX Contents 4.1 Isolated Cuticles a
Page 42:
XXII Contents 6.5 CMEIAS v. 3.0: In
Page 46:
Contributors Abbott, Lynette K. Sch
Page 50:
Ghimire, Sita R. Centre for Researc
Page 54:
Meyer, William Department of Plant
Page 58:
Tripathi,K.K. Department of Biotech
Page 62:
2 Ajit Varma et al. technical diffi
Page 66:
4 Ajit Varma et al. prowazekii with
Page 70:
6 Ajit Varma et al. parasite on oth
Page 74:
8 Ajit Varma et al. interaction wit
Page 78:
10 Ajit Varma et al. mative, quanti
Page 82:
2 Root Colonisation Following Seed
Page 86:
Fig. 1. Colonisation tube system (f
Page 90:
3.4 Seed Inoculation Seeds are plac
Page 94:
Page 98:
selection using GFP-expressing bact
Page 102:
plant roots from the sand, these ca
Page 106:
tant for colonisation, but neither
Page 110:
6.2 Biotic Factors 2 Root Colonisat
Page 114:
Page 118:
Page 122:
Page 126:
36 CH 4 Ralf Conrad O 2 CH 4 methan
Page 130:
38 Ralf Conrad Finally, aquatic pla
Page 134:
40 Ralf Conrad Fig. 3. Emission of
Page 138:
42 Ralf Conrad The general coloniza
Page 142:
44 Ralf Conrad acceptor. However, l
Page 146:
46 Ralf Conrad Brioukhanov A, Netru
Page 150:
48 Ralf Conrad King GM, Garey MA (1
Page 154:
50 Ralf Conrad Yao H, Conrad R (200
Page 158:
52 Galdino Andrade or the transform
Page 162:
54 Galdino Andrade and 2-15 % prote
Page 166:
56 Galdino Andrade organic nitrogen
Page 170:
58 SO4 Galdino Andrade Assimilatory
Page 174:
60 Galdino Andrade phosphate compou
Page 178:
62 Galdino Andrade In our laborator
Page 182:
64 Galdino Andrade Fig. 9. Bacteria
Page 186:
66 Galdino Andrade Plants Carbon De
Page 190:
68 Galdino Andrade organic phosphat
Page 194:
5 Diversity and Functions of Soil M
Page 198:
Page 202:
Page 206:
Page 210:
Page 214:
Page 218:
Page 222:
Page 226:
Page 230:
Page 234:
Page 238:
Page 242:
Page 246:
Page 250:
6 Signalling in the Rhizobia-Legume
Page 254:
acid, ethylene and jasmonates are i
Page 258:
Page 262:
Page 266:
increases the activity of the bdhA
Page 270:
which are perhaps intermediates in
Page 274:
Page 278:
Page 282:
Page 286:
Page 290:
Page 294:
122 Galdino Andrade Some studies ha
Page 298:
124 Galdino Andrade Nutrient limita
Page 302:
126 Galdino Andrade significant qua
Page 306:
128 Galdino Andrade decrease in the
Page 310:
130 Galdino Andrade References and
Page 314:
132 Galdino Andrade Smith RA, Couch
Page 318:
134 Bernard R. Glick and Donna M. P
Page 322:
Page 326:
Page 330:
Page 334:
Page 338:
Page 342:
146 Lukas Schreiber, Ursula Krimm a
Page 346:
Page 350:
Page 354:
Page 358:
Page 362:
Page 366:
158 James F. White Jr. et al. endop
Page 370:
160 James F. White Jr. et al. 4.3 P
Page 374:
162 James F. White Jr. et al. Fig.
Page 378:
164 James F. White Jr. et al. leaf
Page 382:
166 James F. White Jr. et al. cutic
Page 386:
168 James F. White Jr. et al. 6.3 M
Page 390:
170 James F. White Jr. et al. Fig.
Page 394:
172 James F. White Jr. et al. form
Page 398:
174 James F. White Jr. et al. itive
Page 402:
176 James F. White Jr. et al. Clay
Page 406:
178 James F. White Jr. et al. White
Page 410:
180 Michael Kaldorf et al. poplar,
Page 414:
182 Table 1: Studies assessing the
Page 418:
184 Michael Kaldorf et al. 1995). S
Page 422:
186 Michael Kaldorf et al. chitinas
Page 426:
188 Michael Kaldorf et al. resistan
Page 430:
190 Michael Kaldorf et al. the GPD/
Page 434:
192 Michael Kaldorf et al. Referenc
Page 438:
194 Michael Kaldorf et al. Hoffmann
Page 442:
196 Michael Kaldorf et al. van Rhij
Page 446:
198 Rüdiger Hampp and Andreas Maie
Page 450:
Page 454:
Page 458:
Page 462:
Page 466:
Page 470:
Page 474:
212 Ingrid Kottke Fig. 1. Ectomycor
Page 478:
214 Ingrid Kottke nificant structur
Page 482:
216 d Ingrid Kottke rcc ph rccw ccw
Page 486:
218 Ingrid Kottke Fig. 6. Scheme il
Page 490:
220 Ingrid Kottke Picea mariana Mil
Page 494:
222 Ingrid Kottke suberin digestion
Page 498:
224 Ingrid Kottke When dissolving t
Page 502:
226 Ingrid Kottke Oh KI, Melville L
Page 506:
228 respect to soral morphology,tel
Page 510:
230 Robert Bauer and Franz Oberwink
Page 514:
Page 518:
Page 522:
Page 526:
238 Giang Huong Pham et al. The fun
Page 530:
240 Giang Huong Pham et al. reactio
Page 534:
242 Giang Huong Pham et al. Fig. 5.
Page 538:
Page 542:
246 Treated roots were colonized by
Page 546:
248 Giang Huong Pham et al. Fig. 9a
Page 550:
250 Giang Huong Pham et al. Fig. 11
Page 554:
252 Giang Huong Pham et al. 4.6 Tim
Page 558:
Page 562:
Page 566:
Page 570:
260 Giang Huong Pham et al. longed
Page 574:
Page 578:
264 Giang Huong Pham et al. Referen
Page 582:
16 Cellular Basidiomycete-Fungus In
Page 586:
Fig. 1. Hypha of Colacogloea peniop
Page 590:
Page 594:
Page 598:
4.2 Fusion-Interaction 16 Cellular
Page 602:
Fig. 12. Transverse section through
Page 606:
Page 610:
282 Sita R. Ghimire and Kevin D. Hy
Page 614:
Page 618:
Page 622:
Page 626:
Page 630:
Page 634:
294 Marjatta Raudaskoski, Mika Tark
Page 638:
Page 642:
Page 646:
Page 650:
Page 654:
Page 658:
Page 662:
Page 666:
Page 670:
Page 674:
Page 678:
Page 682:
Page 686:
Page 690:
Page 694:
Page 698:
Page 702:
Page 706:
19 Functional Diversity of Arbuscul
Page 710:
Page 714:
Page 718:
Page 722:
Page 726:
Page 730:
Page 734:
Page 738:
Page 742:
Page 746:
352 José-Miguel Barea et al. 1994)
Page 750:
354 José-Miguel Barea et al. 1992;
Page 754:
356 José-Miguel Barea et al. 5 Rea
Page 758:
358 José-Miguel Barea et al. 1992;
Page 762:
360 José-Miguel Barea et al. AM-de
Page 766:
362 José-Miguel Barea et al. pound
Page 770:
364 José-Miguel Barea et al. Berta
Page 774:
366 José-Miguel Barea et al. Giani
Page 778:
368 José-Miguel Barea et al. Lynch
Page 782:
370 José-Miguel Barea et al. Toro
Page 786:
21 Carbohydrates and Nitrogen: Nutr
Page 790:
Page 794:
Page 798:
Page 802:
Page 806:
Page 810:
Page 814:
Page 818:
Page 822:
Page 826:
394 A. Javelle et al. 1.2 Nitrogen
Page 830:
396 A. Javelle et al. genes were re
Page 834:
398 A. Javelle et al. gest that myc
Page 838:
400 A. Javelle et al. 3.3 Isolation
Page 842:
402 A. Javelle et al. lular Gln amo
Page 846:
404 A. Javelle et al. In Paxillus i
Page 850:
406 A. Javelle et al. capabilities
Page 854:
408 A. Javelle et al. as two other
Page 858:
410 A. Javelle et al. Glu. Glutamin
Page 862:
412 A. Javelle et al. Table 1. Rela
Page 866:
414 A. Javelle et al. catalysed by
Page 870:
416 A. Javelle et al. GLU2 is expre
Page 874:
418 A. Javelle et al. gen to plants
Page 878:
420 A. Javelle et al. (Hoshida et a
Page 882:
422 A. Javelle et al. Bajwa R, Abua
Page 886:
424 A. Javelle et al. Garnier A, Be
Page 890:
426 A. Javelle et al. Limami A, Phi
Page 894:
428 A. Javelle et al. Ritchie RJ, G
Page 898:
23 Visualisation of Rhizosphere Int
Page 902:
Page 906:
Page 910:
5 Microscope Analysis of Infection
Page 914:
Page 918:
Page 922:
cells by hyphae. No penetration str
Page 926:
Page 930:
Page 934:
24 Microbial Community Analysis in
Page 938:
titative data about the community c
Page 942:
Page 946:
Page 950:
Page 954:
Page 958:
Page 962:
3.5 Community Analysis by Fatty Aci
Page 966:
Page 970:
Page 974:
Page 978:
472 Contactangle Daniel Knoll and L
Page 982:
474 Daniel Knoll and Lukas Schreibe
Page 986:
Page 990:
478 A cuticle B Daniel Knoll and Lu
Page 994:
Page 998:
Page 1002:
Page 1006:
Page 1010:
26 Quantifying the Impact of ACC De
Page 1014:
Page 1018:
Page 1022:
Page 1026:
Page 1030:
Page 1034:
Page 1038:
27 Applications of Quantitative Mic
Page 1042:
Page 1046:
Page 1050:
Page 1054:
Page 1058:
Page 1062:
Page 1066:
Page 1070:
Page 1074:
Page 1078:
Page 1082:
Page 1086:
Page 1090:
Page 1094:
Page 1098:
Page 1102:
Page 1106:
Page 1110:
Page 1114:
Page 1118:
Page 1122:
Page 1126:
Page 1130:
Page 1134:
28 Analysis of Microbial Population
Page 1138:
- Primers for ITS amplification: FG
Page 1142:
Page 1146:
Page 1150:
6 ITS-RFLP analysis 28 Analysis of
Page 1154:
7 Statistical analysis 28 Analysis
Page 1158:
Software requirements - Scoring of
Page 1162:
Page 1166:
568 Gopi K. Podila and Luisa Lanfra
Page 1170:
Page 1174:
572 Kbp 5.1 - 2 - 1.3 - Gopi K. Pod
Page 1178:
574 Kbp 5.1 - 2 - 0.9 - Gopi K. Pod
Page 1182:
Page 1186:
Page 1190:
Page 1194:
Page 1198:
Page 1202:
Page 1206:
Page 1210:
Page 1214:
Page 1218:
Page 1222:
596 Giang Huong Pham et al. Table 1
Page 1226:
598 Giang Huong Pham et al. nucleic
Page 1230: 600 Giang Huong Pham et al. days wi
Page 1234: 602 Giang Huong Pham et al. Table 3
Page 1238: 604 Giang Huong Pham et al. The mor
Page 1242: 606 phatase in addition to the cons
Page 1246: 608 H3BO3 1.55 MnSO . 4 H2O 0.85 Zn
Page 1250: 610 CuSO 4 . 5H2 O 0.25 CoCl 2 . H2
Page 1254: 612 Giang Huong Pham et al. wrinkle
Page 1258: Subject Index A AAD 590 Abies (fir)
Page 1262: Botanophila 171 Bradyrhizobium 73,
Page 1266: Ectendomycorrhizas 76 Ectomycorrhiz
Page 1270: Horizontal gene transfer (HGT) 4, 1
Page 1274: Mycoparasitic activity 165 Mycopara
Page 1278: Ps. aeruginosa 3 Ps. chlororaphis 2
Page 1284: 628 Subject Index Y Yellow fluoresc
show all

plant surface microbiology.pdf

Create successful ePaper yourself

Delete template?

Save as template?