plant surface microbiology.pdf

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Contents XXIII 6.3 Examples of Expressed Sequence Tag Data Analysis . . . . . 579 7 Macroarrays . . . . . . . . . . . . . . . . . . . . . . . . . . . 582 7.1 PCR Amplification of cDNA Inserts . . . . . . . . . . . . . . 582 7.2 Purification and Quantification of PCR Products . . . . . . 583 7.3 Printing of Macroarrays . . . . . . . . . . . . . . . . . . . . 583 7.4 Generation of Exponential cDNA Probes from RNA for Macroarrays and Hybridization Analysis . . . . . . 584 7.5 Exponential Amplification of the sscDNAs . . . . . . . . . . 585 8 Generation of Radiolabeled Probes . . . . . . . . . . . . . . 585 9 Hybridization of Macroarrays to Radiolabeled Probes . . . 586 10 Data Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . 586 10.1 Data Analysis Autoradiography Images on X-ray Films . . . 587 11 Example of Laccaria bicolor Macroarrays . . . . . . . . . . . 588 12 Conclusions . . . . . . . . . . . . . . . . . . . . . . . . . . . 590 References and Selected Reading . . . . . . . . . . . . . . . . . . . . . 591 30 Axenic Culture of Symbiotic Fungus Piriformospora indica 593 Giang Huong Pham, Rina Kumari, Anjana Singh, Rajani Malla, Ram Prasad, Minu Sachdev, Michael Kaldorf, Francois Buscot, Ralf Oelmuller, Rüdiger Hampp, Anil Kumar Saxena, Karl-Heinz Rexer, Gerhard Kost and Ajit Varma 1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . 593 2 Morphology . . . . . . . . . . . . . . . . . . . . . . . . . . . 593 3 Taxonomy of the Fungus . . . . . . . . . . . . . . . . . . . . 595 4 Chlamydospore Formation and Germination . . . . . . . . 597 5 Cultivation . . . . . . . . . . . . . . . . . . . . . . . . . . . . 597 6 Carbon and Energy Sources . . . . . . . . . . . . . . . . . . 600 7 Biomass on Individual Amino Acids . . . . . . . . . . . . . . 604 8 Growth on Complex Media . . . . . . . . . . . . . . . . . . . 604 9 Phosphatic Nutrients . . . . . . . . . . . . . . . . . . . . . . 605 10 Composition of Media . . . . . . . . . . . . . . . . . . . . . 606 11 Conclusions . . . . . . . . . . . . . . . . . . . . . . . . . . . 612 References and Selected Reading . . . . . . . . . . . . . . . . . . . . . 612 Subject Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 615
Page 2: PLANT SURFACE MICROBIOLOGY
Page 6: Professor Dr. Ajit Varma Director A
Page 10: VI ology. The basic concepts in pla
Page 14: VIII Contents 6.1 Abiotic Factors .
Page 18: X Section B Contents 7 The Function
Page 22: XII 3 Impact of Genetically Modifie
Page 26: XIV 4.9 Arabidopsis thaliana . . .
Page 30: XVI Contents 4.1 Diversity of Arbus
Page 34: XVIII 6.2 Role and Properties of Gl
Page 38: XX Contents 4.1 Isolated Cuticles a
Page 42: XXII Contents 6.5 CMEIAS v. 3.0: In
Page 48: XXVI Contributors Belanger, Faith D
Page 52: XXVIII Contributors Kottke, Ingrid
Page 56: XXX Contributors Pukall, Rüdiger D
Page 60: 1 The State of the Art Ajit Varma,
Page 64: 1 The State of the Art 3 microsymbi
Page 68: 1 The State of the Art 5 symbiotic
Page 72: 1 The State of the Art 7 responses
Page 76: 1 The State of the Art 9 great adva
Page 80: 1 The State of the Art 11 erature i
Page 84: 14 Thomas F.C. Chin-A-Woeng and Ben
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20 Table 1. Reporter genes commonly
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22 Thomas F.C. Chin-A-Woeng and Ben
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3 Methanogenic Microbial Communitie
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3 Methaogenic Microbial Communities
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4 Role of Functional Groups of Micr
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Population 1 Population 2 Populatio
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4 Microorganisms on the Rhizosphere
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6 Functional Groups of Microrganism
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72 Ramesh Chander Kuhad et al. need
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74 Ramesh Chander Kuhad et al. meas
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76 Ramesh Chander Kuhad et al. 3 Ro
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78 Ramesh Chander Kuhad et al. root
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80 Ramesh Chander Kuhad et al. domi
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82 Ramesh Chander Kuhad et al. from
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84 Ramesh Chander Kuhad et al. 3.4
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86 Ramesh Chander Kuhad et al. cell
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88 Ramesh Chander Kuhad et al. of b
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90 Ramesh Chander Kuhad et al. in s
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92 Ramesh Chander Kuhad et al. Berc
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94 Ramesh Chander Kuhad et al. Hawk
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96 Ramesh Chander Kuhad et al. Pros
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98 Ramesh Chander Kuhad et al. Vier
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100 Dietrich Werner Fig. 1. Notch t
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102 Dietrich Werner 2.1 Phenylpropa
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104 Dietrich Werner 2.2 Metabolizat
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106 Dietrich Werner equol, genistei
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108 Dietrich Werner Table 2. Modifi
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110 Dietrich Werner 3.3 Lipopolysac
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112 Dietrich Werner There is increa
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114 Dietrich Werner antimicrobial f
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116 Dietrich Werner Hofmann K, Hein
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118 Dietrich Werner Schröder O, Wa
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7 The Functional Groups of Micro-or
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8 The Use of ACC Deaminase-Containi
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wood-rotting fungi, were shown to i
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8 ACC Deaminase-Containing Plant Gr
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9 Interactions Between Epiphyllic M
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However, at the moment, the mechani
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10 Developmental Interactions Betwe
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10 Development Interactions Between
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11 Interactions of Microbes with Ge
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GMP species, Group(s) of organisms
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a single copy gene of A. muscaria (
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12 Interaction Between Soil Bacteri
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Table 1. Protein features and data
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13 The Surface of Ectomycorrhizal R
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mrc rc rc a b c d 13 Root Surface i
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ccw cc rccw cc rccw ccw ph rccw rcc
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cc cc cc sl cc rcc 13 Root Surface
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13 Root Surface in Ectomycorrhizas
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ccw cc hy sl rccw hy hy 7 Hartig Ne
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9 Conclusions 13 Root Surface in Ec
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13 Root Surface in Ectomycorrhizas
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14 Cellular Ustilaginomycete - Plan
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5 Cellular Interactions 14 Cellular
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Fig. 3. Local interaction zone with
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14 Cellular Ustilaginomycete - Plan
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6 Conclusions 14 Cellular Ustilagin
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15 Interaction of Piriformospora in
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268 Suberkropp 1990; Bauer et al. 1
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270 Robert Bauer and Franz Oberwink
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17 Fungal Endophytes Sita R. Ghimir
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17 Fungal Endophytes 283 increase d
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comprises dipping samples in 96 % e
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with saprobic fungi. Host exclusivi
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17 Fungal Endophytes 289 Carroll G
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17 Fungal Endophytes 291 Mills PR,
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18 Mycorrhizal Development and Cyto
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2.2 Expression of Actin-Encoding Ge
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6 Actin Binding Proteins 18 Mycorrh
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etween the function of cell cycle a
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hiza. Cells with well-preserved cyt
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332 M. Zakaria Solaiman and Lynette
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20 Mycorrhizal Fungi and Plant Grow
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een described as a plant-growth-pro
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374 Uwe Nehls 2 Trehalose Utilizati
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376 Uwe Nehls mon to ectomycorrhiza
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378 Uwe Nehls monosaccharide transp
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380 Uwe Nehls Fig. 2. Spatial distr
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382 Uwe Nehls quite untypical for f
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384 Uwe Nehls the utilization of al
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386 Uwe Nehls have been described.
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388 Uwe Nehls script profiling duri
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390 Uwe Nehls Scheller E (1996) Ami
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22 Nitrogen Transport and Metabolis
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432 Thomas F.C. Chin-A-Woeng et al.
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450 Anton Hartmann et al. The rhizo
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452 Table 1. Phylogenetic oligonucl
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454 Anton Hartmann et al. B D
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456 Anton Hartmann et al. root surf
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458 Anton Hartmann et al. (see abov
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460 Anton Hartmann et al. to 13, 26
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462 Anton Hartmann et al. root surf
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464 Anton Hartmann et al. media are
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466 Anton Hartmann et al. Gorlach K
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468 Anton Hartmann et al. Poindexte
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25 Methods for Analysing the Intera
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25 Analysing Interactions between M
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into the nutrition solution inside
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An example for the change in water
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490 Donna M. Penrose and Bernard R.
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494 Absorbance at 540 nm 1.6 1.4 1.
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504 Frank B. Dazzo electron, and fi
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506 Frank B. Dazzo the microsymbion
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508 Frank B. Dazzo degrade the bact
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510 Frank B. Dazzo Fig. 4. Phase co
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512 Frank B. Dazzo Fig. 5. Symbiont
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514 Frank B. Dazzo microscopy. The
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516 Frank B. Dazzo the rhizobial ex
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518 Frank B. Dazzo In contrast, qua
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520 Frank B. Dazzo biological activ
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522 Frank B. Dazzo NBD-labeled CLOS
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524 Frank B. Dazzo cated that the s
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526 Frank B. Dazzo to introduce pol
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528 Frank B. Dazzo response is less
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530 Frank B. Dazzo mizing the gyror
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532 Frank B. Dazzo including its re
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534 Frank B. Dazzo Table 1. Quantit
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536 Frank B. Dazzo and eukaryotic c
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538 Frank B. Dazzo Table 2. In situ
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540 Frank B. Dazzo involvement of t
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542 Frank B. Dazzo Fig. 16. Geostat
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544 Frank B. Dazzo the power of geo
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546 Frank B. Dazzo Dazzo FB, Hollin
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548 Frank B. Dazzo erney MJ, Stetze
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550 Frank B. Dazzo van Workum WAT,
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552 Emanuele G. Biondi 2 Materials
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554 Emanuele G. Biondi eral species
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556 - Low intensity of the bands: i
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558 Emanuele G. Biondi CCA ATT CT-3
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560 Emanuele G. Biondi Experimental
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562 Emanuele G. Biondi two strains
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564 Emanuele G. Biondi References a
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29 Functional Genomic Approaches fo
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30 Axenic Culture of Symbiotic Fung
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9 Phosphatic Nutrients 30 Axenic Cu
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Modified aspergillus medium (Varma
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616 Subject Index Antifungal activi
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618 Subject Index Cryosection 317 C
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620 Subject Index Fusarium sp. 73,
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622 Subject Index Leaf surface colo
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624 Subject Index Penicillium sp. 7
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626 Subject Index Salmon sperm DNA
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628 Subject Index Y Yellow fluoresc
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