plant surface microbiology.pdf

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108 Dietrich Werner Table 2. Modifications of Nod factors (Modified from Spaink 2000 and Pacios-Bras et al. 2002) a Bacterial strain Nodulated GlcNAc Special substituents c <strong>plant</strong> residues tribes (n) b S. meliloti Galegeae 3,4,5 R4:Ac, R5:S, C16:2, C16:3, C26(w-1)OH R. leguminosarum bv. Viciae RBL5560 Galegeae 3,4,5 R4:Ac, C18:4 bv. Viciae TOM Galegeae 3,4,5 R4:Ac, R5:Ac, C18:4 bv. Viciae A1 Galegeae 3,4,5 R4:Ac, R5:Ac, C18:4, C18:3 bv. Trifolii ANU842 Galegeae 3,4,5 R4:AC, R5:Ac, R6:Et, C20:4, C20:3, C18:3 R. galegae Galegeae 4,5 R4:Cb, R9:Ac, C18:2, C18:3, C20:2, C20:3 M. huakuii Galegeae 3,4,5 R5:S, R7:G, C18:4 M. loti E1R, NZP2235 Loteae 4,5 R1:Me, R3:Cb, R5:AcFuc NZP2037 Loteae Genisteae 4,5 R1:Me, R2:Cb, R3:Cb, R5:AcFuc NZP2213 Loteae 2,3,4,5 R1:Me, R3:Cb, R5:AcFuc, R9:Fuc B. aspalati bv. carnosa Crotalarieae 3,4,5 R1:Me, R3:Cb, R4:Cb B. japonicum USDA110 Phaseoleae 5 R5:MeFuc B. japonicum USDA135 Phaseoleae 5 R4:Ac, R5:MeFuc B. elkanii USDA61 Phaseoleae 4,5 R1:Me, R4:Ac, R3:Cb, R5:MeFuc, R6:Gro R. etli Phaseoleae 4,5 R1:Me, R3:Cb, R5:AcFuc R. etli KIM5S Phaseoleae 6 R1:Me, R2-R6:H, R7:acetyl, R8:H, ring 5:acetyl or H R. tropici Phaseoleae, 4,5 R1:Me, R5:S, R6:Man Mimoseae S. fredii USDA257 23 Tribes 3, 4,5 R5:MeFuc NGR234 26 Tribes 4,5 R1:Me, R3:Cb, R4:Cb, R5:MeFuc/AcMe- Fuc/SmeFuc Rhizobium sp. GRH2 Acacieae 3,5,6 R1:Me, R5:S S. teranga bv. acaciae Acacieae 5 R1:Me, R3/4:Cb, R5:S Mesorhizobium ORS1001 Acacieae 5 R1:Me, R3/4:Cb, R5:S A. caulinodans Robinieae 4,5 R1:Me, R4:Cb, R5:Fuc, R8:Ara S. sahelii Robinieae 4,5 R1:Me, R3/4:Cb, R5:Fuc, R8:Ara S. teranga bv. sesbaniae Robinieae 4,5 R1:Me, R3/4:Cb, R5:Fuc, R8:Ara a For backbone structure, see Fig. 4 b The underlined numbers of N-acetylglucosamine (GlcNAc) residues indicate the most abundant species c The indicated substituents do not always occur in all lipochitin oligosaccharides (LCOs) produced, leading to a mixture of LCOs, which do or do not contain all possible substituents. Abbreviations: Me, N-methyl; Cb, O-carbamyl; Ac, O-acetyl; S, O-sulfyl; Fuc, a-linked fucosyl; MeFuc, 2-O-methylfucosyl, AcMeFuc, 4-O-acetyl-2- O-methylfucosyl; SmeFuc, 3-O-sulfate-2-Omethylfucosyl; Et, ethyl, Gro, glyceryl, Man, mannosyl; G, N-glycolyl; FA, fatty acyl
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PLANT SURFACE MICROBIOLOGY
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Professor Dr. Ajit Varma Director A
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VI ology. The basic concepts in pla
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VIII Contents 6.1 Abiotic Factors .
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X Section B Contents 7 The Function
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XII 3 Impact of Genetically Modifie
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XIV 4.9 Arabidopsis thaliana . . .
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XVI Contents 4.1 Diversity of Arbus
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XVIII 6.2 Role and Properties of Gl
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XX Contents 4.1 Isolated Cuticles a
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XXII Contents 6.5 CMEIAS v. 3.0: In
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Contributors Abbott, Lynette K. Sch
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Ghimire, Sita R. Centre for Researc
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Meyer, William Department of Plant
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Tripathi,K.K. Department of Biotech
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2 Ajit Varma et al. technical diffi
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4 Ajit Varma et al. prowazekii with
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6 Ajit Varma et al. parasite on oth
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8 Ajit Varma et al. interaction wit
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10 Ajit Varma et al. mative, quanti
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2 Root Colonisation Following Seed
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Fig. 1. Colonisation tube system (f
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3.4 Seed Inoculation Seeds are plac
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selection using GFP-expressing bact
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plant roots from the sand, these ca
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tant for colonisation, but neither
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6.2 Biotic Factors 2 Root Colonisat
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36 CH 4 Ralf Conrad O 2 CH 4 methan
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38 Ralf Conrad Finally, aquatic pla
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40 Ralf Conrad Fig. 3. Emission of
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42 Ralf Conrad The general coloniza
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44 Ralf Conrad acceptor. However, l
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46 Ralf Conrad Brioukhanov A, Netru
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48 Ralf Conrad King GM, Garey MA (1
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50 Ralf Conrad Yao H, Conrad R (200
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52 Galdino Andrade or the transform
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54 Galdino Andrade and 2-15 % prote
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56 Galdino Andrade organic nitrogen
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58 SO4 Galdino Andrade Assimilatory
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60 Galdino Andrade phosphate compou
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62 Galdino Andrade In our laborator
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64 Galdino Andrade Fig. 9. Bacteria
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66 Galdino Andrade Plants Carbon De
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68 Galdino Andrade organic phosphat
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5 Diversity and Functions of Soil M
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wood-rotting fungi, were shown to i
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8 ACC Deaminase-Containing Plant Gr
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9 Interactions Between Epiphyllic M
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However, at the moment, the mechani
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10 Developmental Interactions Betwe
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10 Development Interactions Between
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11 Interactions of Microbes with Ge
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GMP species, Group(s) of organisms
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a single copy gene of A. muscaria (
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12 Interaction Between Soil Bacteri
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Table 1. Protein features and data
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13 The Surface of Ectomycorrhizal R
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mrc rc rc a b c d 13 Root Surface i
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ccw cc rccw cc rccw ccw ph rccw rcc
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cc cc cc sl cc rcc 13 Root Surface
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13 Root Surface in Ectomycorrhizas
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ccw cc hy sl rccw hy hy 7 Hartig Ne
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9 Conclusions 13 Root Surface in Ec
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13 Root Surface in Ectomycorrhizas
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14 Cellular Ustilaginomycete - Plan
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5 Cellular Interactions 14 Cellular
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Fig. 3. Local interaction zone with
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14 Cellular Ustilaginomycete - Plan
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6 Conclusions 14 Cellular Ustilagin
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15 Interaction of Piriformospora in
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268 Suberkropp 1990; Bauer et al. 1
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270 Robert Bauer and Franz Oberwink
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17 Fungal Endophytes Sita R. Ghimir
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17 Fungal Endophytes 283 increase d
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comprises dipping samples in 96 % e
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with saprobic fungi. Host exclusivi
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17 Fungal Endophytes 289 Carroll G
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17 Fungal Endophytes 291 Mills PR,
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18 Mycorrhizal Development and Cyto
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2.2 Expression of Actin-Encoding Ge
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6 Actin Binding Proteins 18 Mycorrh
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etween the function of cell cycle a
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hiza. Cells with well-preserved cyt
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332 M. Zakaria Solaiman and Lynette
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20 Mycorrhizal Fungi and Plant Grow
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een described as a plant-growth-pro
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374 Uwe Nehls 2 Trehalose Utilizati
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376 Uwe Nehls mon to ectomycorrhiza
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378 Uwe Nehls monosaccharide transp
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380 Uwe Nehls Fig. 2. Spatial distr
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382 Uwe Nehls quite untypical for f
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384 Uwe Nehls the utilization of al
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386 Uwe Nehls have been described.
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388 Uwe Nehls script profiling duri
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390 Uwe Nehls Scheller E (1996) Ami
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22 Nitrogen Transport and Metabolis
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432 Thomas F.C. Chin-A-Woeng et al.
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450 Anton Hartmann et al. The rhizo
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452 Table 1. Phylogenetic oligonucl
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454 Anton Hartmann et al. B D
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456 Anton Hartmann et al. root surf
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458 Anton Hartmann et al. (see abov
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460 Anton Hartmann et al. to 13, 26
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462 Anton Hartmann et al. root surf
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464 Anton Hartmann et al. media are
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466 Anton Hartmann et al. Gorlach K
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468 Anton Hartmann et al. Poindexte
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25 Methods for Analysing the Intera
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25 Analysing Interactions between M
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into the nutrition solution inside
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An example for the change in water
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490 Donna M. Penrose and Bernard R.
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494 Absorbance at 540 nm 1.6 1.4 1.
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504 Frank B. Dazzo electron, and fi
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506 Frank B. Dazzo the microsymbion
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508 Frank B. Dazzo degrade the bact
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510 Frank B. Dazzo Fig. 4. Phase co
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512 Frank B. Dazzo Fig. 5. Symbiont
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514 Frank B. Dazzo microscopy. The
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516 Frank B. Dazzo the rhizobial ex
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518 Frank B. Dazzo In contrast, qua
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520 Frank B. Dazzo biological activ
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522 Frank B. Dazzo NBD-labeled CLOS
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524 Frank B. Dazzo cated that the s
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526 Frank B. Dazzo to introduce pol
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528 Frank B. Dazzo response is less
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530 Frank B. Dazzo mizing the gyror
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532 Frank B. Dazzo including its re
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534 Frank B. Dazzo Table 1. Quantit
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536 Frank B. Dazzo and eukaryotic c
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538 Frank B. Dazzo Table 2. In situ
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540 Frank B. Dazzo involvement of t
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542 Frank B. Dazzo Fig. 16. Geostat
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544 Frank B. Dazzo the power of geo
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546 Frank B. Dazzo Dazzo FB, Hollin
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548 Frank B. Dazzo erney MJ, Stetze
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550 Frank B. Dazzo van Workum WAT,
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552 Emanuele G. Biondi 2 Materials
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554 Emanuele G. Biondi eral species
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556 - Low intensity of the bands: i
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558 Emanuele G. Biondi CCA ATT CT-3
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560 Emanuele G. Biondi Experimental
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562 Emanuele G. Biondi two strains
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564 Emanuele G. Biondi References a
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29 Functional Genomic Approaches fo
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30 Axenic Culture of Symbiotic Fung
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9 Phosphatic Nutrients 30 Axenic Cu
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Modified aspergillus medium (Varma
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616 Subject Index Antifungal activi
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618 Subject Index Cryosection 317 C
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620 Subject Index Fusarium sp. 73,
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622 Subject Index Leaf surface colo
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624 Subject Index Penicillium sp. 7
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626 Subject Index Salmon sperm DNA
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628 Subject Index Y Yellow fluoresc
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