plant surface microbiology.pdf

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Gopi K. Podila and Luisa Lanfranco
Table 1. Selected list of EST clones from G. margarita and their similarity to known
genes and E values to indicate the level of similarity.
Clone BLASTX similarity Species E value
1 14–3-3 Protein Lentinula edodes e –101
2 Endopeptidase Arabidopsis thaliana 1e –88
3 Heat shock protein HSS1 Puccinia graminis 1e –71
4 Cell cycle switch protein Medicago sativa 7e –68
5 Protein involved in phosphate metabolism Saccharomyces cerevisiae 2e –52
6 Cu-Zn Superoxide dismutase Ovis aries 7e –51
7 Pre-mRNA cleavage factor Homo sapiens 4e –49
8 Spliceosome-associated protein Schizosaccharomyces pombe 6e –47
9 Aldehyde dehydrogenase Caenorhabditis elegans 3e –46
10 Polyubiquitine Neurospora crassa 5e –44
11 Histone H4 Styela plicata 3e –39
12 Maleylacetate isomerase 2 Drosophila melanogaster 1e –37
13 Cytidindeaminase Homo sapiens 1e –30
14 Glutathione S transferase Naegleria fowleri 7e –24
15 Ornithine carbamoyltransferase Aspergillus terreus 7e –21
16 Transcriptional factor StuA Aspergillus nidulans 4e –21
17 Subunit G of vacuolar ATP synthase Neurospora crassa 5e –20
18 Isocitrate lyase Dendrobium crumenatum 1e –20
Fig. 3. Distribution of G. margarita EST clones based on the level of BLASTX similarity
ESTs presenting an E value