Reproduction in Domestic Animals

366 ACO Evans, N Forde, GM O’Gorman, AE Zielak, P Lonergan and T FairCorcoran D, Fair T, Park S, Rizos D, Patel OV, Smith GW,Coussens PM, Ireland JJ, Boland MP, Evans ACO, LonerganP, 2006: Suppressed expression of genes involved intranscription and translation in in vitro compared with invivo cultured bovine embryos. Reproduction 131, 651–660.Dalbies-Tran R, Mermillod P, 2003: Use of heterologouscomplementary DNA array screening to analyze bovineoocyte transcriptome and its evolution during in vitromaturation. Biol Reprod 68, 252–261.Dalma-Weiszhausz DD, Warrington J, Tanimoto EY, MiyadaCG, 2006: The affymetrix GeneChip platform: an overview.Methods Enzymol 410, 3–28.De Bruyne V, Al-Mulla F, Pot B, 2007: Methods formicroarray data analysis. Methods Mol Biol 382, 373–391.Dessie SW, Rings F, Holker M, Gilles M, Jennen D, Tholen E,Havelicek V, Besenfelder U, Sukhorukov VL, ZimmermanU, Endter JM, Sirad MA, Schellander K, Tesfaye D, 2007:Dielectrophoretic behavior of in vitro-derived bovine metaphaseII oocytes and zygotes and its relation to in vitroembryonic developmental competence and mRNA expressionpattern. Reproduction 133, 931–946.Diskin MG, Murphy JJ, Sreenan JM, 2006: Embryo survivalin dairy cows managed under pastoral conditions. AnimReprod Sci 96, 297–311.Dunne LD, Diskin MG, Sreenan JM, 2000: Embryo and foetalloss in beef heifers between day 14 of gestation and full term.Anim Reprod Sci 58, 39–44.El-Sayed A, Hoelker M, Rings F, Salilew D, Jennen D, TholenE, Sirard MA, Schellander K, Tesfaye D, 2006: Large-scaletranscriptional analysis of bovine embryo biopsies in relationto pregnancy success after transfer to recipients. PhysiolGenomics 28, 84–96.Evans ACO, Ireland JLH, Winn ME, Lonergan P, Smith GW,Coussens PM, Ireland JJ, 2004: Identification of genesinvolved in apoptosis and dominant follicle developmentduring follicular waves in cattle. Biol Reprod 70, 1475–1484.Everts RE, Band MR, Liu ZL, Kumar CG, Liu L, Loor JJ,Oliveira R, Lewin HA, 2005: A 7872 cDNA microarray andits use in bovine functional genomics. Vet Immunol Immunopathol105, 235–245.Fair T, Murphy M, Rizos D, Moss C, Martin F, Boland MP,Lonergan P, 2004: Analysis of differential maternal mRNAexpression in developmentally competent and incompetentbovine two-cell embryos. Mol Reprod Dev 67, 136–144.Fair T, Carter F, Park S, Evans ACO, Lonergan P, 2007:Global gene expression analysis during bovine oocyte invitro maturation. Theriogenology 68(Suppl. 1), S91–S97.Fields S, 2007: Molecular biology. Site-seeing by sequencing.Science 316, 1441–1442.Forde N, Rogers M, Canty MJ, Lonergan P, Smith GW,Coussens PM, Ireland JJ, Evans ACO, 2007: Association ofthe prion protein and its expression with ovarian follicledevelopment in cattle. Mol Reprod Dev 75, 248–249.Forde N, Mihm M, Canty M, Zielak A, Baker P, Park S,Lonergan P, Smith G, Coussens P, Ireland J, Evans A, 2008a:Differential expression of signal transduction factors inovarian follicle development; a role for betaglycan andFIBP in granulosa cells in cattle. Physiol Genomics 33,193–204.Forde N, Carter F, Fair T, Crowe MA, Evans ACO, SpencerTE, Bazer FW, O’Gaora P, McBride R, Boland MP,Lonergan P, Roche JF, 2008b: Effect of pregnancy andprogesterone on gene expression in the uterine endometriumof cattle. Annual Meeting of the Society for the Study ofReproduction, Hawaii, USA (27 to 30 May 2008). Biologyof Reproduction, Special Issue, Abstract #37.Fortune JE, Rivera GM, Yang MY, 2004: Follicular development:the role of the follicular microenvironment in selectionof the dominant follicle. Anim Reprod Sci 82–83, 109–126.Garrett JE, Geisert RD, Zavy MT, Morgan GL, 1988:Evidence for maternal regulation of early conceptus growthand development in beef cattle. J Reprod Fertil 84, 437–446.Ghanem N, Holker M, Rings F, Jennen D, Tholen E, SirardMA, Torner H, Kanitz W, Schellander K, Tesfaye D, 2007:Alterations in transcript abundance of bovine oocytesrecovered at growth and dominance phases of the firstfollicular wave. BMC Dev Biol 7, 90.Grant GR, Manduchi E, Stoeckert CJ Jr, 2007: Analysis andmanagement of microarray gene expression data. CurrProtoc Mol Biol (Suppl. 77) Chapter 19.6, 1–30.Hager J, 2006: Making and using spotted DNA microarrays inan academic core laboratory. Methods Enzymol 410, 135–168.Heyman Y, Chavatte-Palmer P, LeBourhis D, Camous S,Vignon X, Renard JP, 2002: Frequency and occurrence oflate-gestation losses from cattle cloned embryos. BiolReprod 66, 6–13.Hill JR, Burghardt RC, Jones K, Long CR, Looney CR, ShinT, Spencer TE, Thompson JA, Winger QA, Westhusin ME,2000: Evidence for placental abnormality as the major causeof mortality in first-trimester somatic cell cloned bovinefetuses. Biol Reprod 63, 1787–1794.Holloway AJ, van Laar RK, Tothill RW, Bowtell DD, 2002:Options available – from start to finish – for obtaining datafrom DNA microarrays II. Nat Genet 32(Suppl.), 481–489.Horcajadas JA, Sharkey AM, Catalano RD, Sherwin JR,Dominguez F, Burgos LA, Castro A, Peraza MR, PellicerA, Simon C, 2006: Effect of an intrauterine device on thegene expression profile of the endometrium. J Clin EndocrinolMetab 91, 3199–3207.Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ,Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, MeyerMB, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB,Cavet G, Walker WL, West A, Coffey E, Shoemaker DD,Stoughton R, Blanchard AP, Friend SH, Linsley PS, 2001:Expression profiling using microarrays fabricated by an inkjetoligonucleotide synthesizer. Nat Biotechnol 19, 342–347.Humblot P, 2001: Use of pregnancy specific proteins andprogesterone assays to monitor pregnancy and determinethe timing, frequencies and sources of embryonic mortalityin ruminants. Theriogenology 56, 1417–1433.Johnson GA, Spencer TE, Burghardt RC, Joyce MM, BazerFW, 2000: Interferon-tau and progesterone regulate ubiquitincross-reactive protein expression in the ovine uterus.Biol Reprod 62, 622–627.Joyce M, Burghardt R, Bazer F, Zaunbrecher G, Johnson G,2003: Interferon-stimulated genes (ISGs) are induced in theendometrium of pregnant but not pseudopregnant pigs. BiolReprod 68 (Suppl. 1), Abstract 230, 206.Kashiwagi A, DiGirolamo CM, Kanda Y, Niikura Y, EsmonCT, Hansen TR, Shioda T, Pru JK, 2007: The postimplantationembryo differentially regulates endometrial gene expressionand decidualization. Endocrinology 148, 4173–4184.Klein C, Bauersachs S, Ulbrich SE, Einspanier R, Meyer HH,Schmidt SE, Reichenbach HD, Vermehren M, Sinowatz F,Blum H, Wolf E, 2006: Monozygotic twin model reveals novelembryo-induced transcriptome changes of bovine endometriumin the preattachment period. Biol Reprod 74, 253–264.Kreil DP, Russell RR, Russell S, 2006: Microarray oligonucleotideprobes. Methods Enzymol 410, 73–98.Lingenfelter BM, Dailey RA, Inskeep EK, Vernon MW, PooleDH, Rhinehart JD, Yao J, 2008: Microarray analysis ofgene expression in granulosal cells from persistent follicles incattle. Anim Reprod Sci 104, 405–413.Lonergan P, Rizos D, Gutierrez-Adan A, Fair T, Boland MP,2003: Oocyte and embryo quality: effect of origin, cultureconditions and gene expression patterns. Reprod DomestAnim 38, 259–267.Ó 2008 The Authors. Journal compilation Ó 2008 Blackwell Verlag