Reproduction in Domestic Animals

Use of Microarray Technology for Reproduction in Cattle 367Lonergan P, Pedersen HG, Rizos D, Greve T, Thomsen PD,Fair T, Evans A, Boland MP, 2004: Effect of the postfertilizationculture environment on the incidence of chromosomeaberrations in bovine blastocysts. Biol Reprod 71,1096–1100.Lonergan P, Fair T, Corcoran D, Evans ACO, 2006: Effect ofculture environment on gene expression and developmentalcharacteristics in IVF-derived embryos. Theriogenology 65,137–152.Lyons P, 2003: Advances in spotted microarray resources forexpression profiling. Brief Funct Genomic Proteomic 2, 21–30.McGall GH, Christians FC, 2002: High-density geneChipoligonucleotide probe arrays. Adv Biochem Eng Biotechnol77, 21–42.McKusick VA, Ruddle FH, 1987: A new discipline, a newname, a new journal. Genomics 1, 1–2.Mihm M, Bleach EC, 2003: Endocrine regulation of ovarianantral follicle development in cattle. Anim Reprod Sci 78,217–237.Mihm M, Evans ACO, 2008: Mechanisms for dominant follicleselection in monovulatory species: a comparison of morphological,endocrine and intraovarian events in cows, maresand women. Reprod Domest Anim 43(Suppl. 2), 48–56.Mihm M, Baker PJ, Ireland JL, Smith GW, Coussens PM,Evans ACO, Ireland JJ, 2006: Molecular evidence that growthof dominant follicles involves a reduction in follicle-stimulatinghormone dependence and an increase in luteinizinghormone dependence in cattle. Biol Reprod 74, 1051–1059.Mihm M, Baker PJ, Fleming LM, Monteiro AM, O’ShaughnessyPJ, 2008: Differentiation of the bovine dominantfollicle from the cohort upregulates mRNA expression fornew tissue development genes. Reproduction 135, 253–265.Misirlioglu M, Page GP, Sagirkaya H, Kaya A, Parrish JJ,First NL, Memili E, 2006: Dynamics of global transcriptomein bovine matured oocytes and preimplantationembryos. Proc Natl Acad Sci U S A 103, 18905–18910.Mitko K, Ulbrich SE, Wenigerkind H, Sinowatz F, Blum H,Wolf E, Bauersachs S, 2008: Dynamic changes in messengerRNA profiles of bovine endometrium during the oestrouscycle. Reproduction 135, 225–240.Mourot M, Dufort I, Gravel C, Algriany O, Dieleman S, SirardMA, 2006: The influence of follicle size, FSH-enrichedmaturation medium, and early cleavage on bovine oocytematernal mRNA levels. Mol Reprod Dev 73, 1367–1379.Niemann H, Carnwath JW, Kues W, 2007: Application ofDNA array technology to mammalian embryos. Theriogenology68(Suppl. 1), S165–S177.Patel OV, Bettegowda A, Ireland JJ, Coussens PM, LonerganP, Smith GW, 2007: Functional genomics studies of oocytecompetence: evidence that reduced transcript abundance forfollistatin is associated with poor developmental competenceof bovine oocytes. Reproduction 133, 95–106.Pfister-Genskow M, Myers C, Childs LA, Lacson JC, PattersonT, Betthauser JM, Goueleke PJ, Koppang RW, LangeG, Fisher P, Watt SR, Forsberg EJ, Zheng Y, Leno GH,Schultz RM, Liu B, Chetia C, Yang X, Hoeschele I,Eilertsen KJ, 2005: Identification of differentially expressedgenes in individual bovine preimplantation embryos producedby nuclear transfer: improper reprogramming ofgenes required for development. Biol Reprod 72, 546–555.Quackenbush J, 2002: Microarray data normalization andtransformation. Nat Genet 32(Suppl.), 496–501.Rizos D, Ward F, Duffy P, Boland MP, Lonergan P, 2002:Consequences of bovine oocyte maturation, fertilization orearly embryo development in vitro versus in vivo: implicationsfor blastocyst yield and blastocyst quality. MolReprod Dev 61, 234–248.Ross JW, Ashworth MD, White FJ, Johnson GA, Ayoubi PJ,DeSilva U, Whitworth KM, Prather RS, Geisert RD, 2007:Premature estrogen exposure alters endometrial gene expressionto disrupt pregnancy in the pig. Endocrinology 148,4761–4773.Schena M, Shalon D, Davis RW, Brown PO, 1995: Quantitativemonitoring of gene expression patterns with acomplementary DNA microarray. Science 270, 467–470.Schulze A, Downward J, 2001: Navigating gene expressionusing microarrays – a technology review. Nat Cell Biol 3,E190–E195.Sirard MA, Richard F, Blondin P, Robert C, 2006: Contributionof the oocyte to embryo quality. Theriogenology 65,126–136.Sisco B, Hagemann LJ, Shelling AN, Pfeffer PL, 2003:Isolation of genes differentially expressed in dominant andsubordinate bovine follicles. Endocrinology 144, 3904–3913.Smith GW, Rosa GJ, 2007: Interpretation of microarray data:trudging out of the abyss towards elucidation of biologicalsignificance. J Anim Sci 85, E20–E23.Smith SL, Everts RE, Tian XC, Du F, Sung LY, Rodriguez-Zas SL, Jeong BS, Renard JP, Lewin HA, Yang X, 2005:Global gene expression profiles reveal significant nuclearreprogramming by the blastocyst stage after cloning. ProcNatl Acad Sci U S A 102, 17582–17587.Somers J, Smith C, Donnison M, Wells DN, Henderson H,McLeay L, Pfeffer PL, 2006: Gene expression profiling ofindividual bovine nuclear transfer blastocysts. Reproduction131, 1073–1084.Suchyta SP, Sipkovsky S, Kruska R, Jeffers A, McNulty A,Coussens MJ, Tempelman RJ, Halgren RG, Saama PM,Bauman DE, Boisclair YR, Burton JL, Collier RJ, DePetersEJ, Ferris TA, Lucy MC, McGuire MA, Medrano JF,Overton TR, Smith TP, Smith GW, Sonstegard TS, SpainJN, Spiers DE, Yao J, Coussens PM, 2003: Developmentand testing of a high-density cDNA microarray resource forcattle. Physiol. Genomics 15, 158–164.Ushizawa K, Herath CB, Kaneyama K, Shiojima S, HirasawaA, Takahashi T, Imai K, Ochiai K, Tokunaga T, TsunodaY, Tsujimoto G, Hashizume K, 2004: cDNA microarrayanalysis of bovine embryo gene expression profiles duringthe pre-implantation period. Reprod Biol Endocrinol 2, 77.Webb R, Campbell BK, 2007: Development of the dominantfollicle: mechanisms of selection and maintenance of oocytequality. Soc Reprod Fertil Suppl 64, 141–163.Wrenzycki C, Herrmann D, Lucas-Hahn A, Korsawe K,Lemme E, Niemann H, 2005: Messenger RNA expressionpatterns in bovine embryos derived from in vitro proceduresand their implications for development. Reprod Fertil Dev17, 23–35.Wrenzycki C, Herrmann D, Niemann H, 2007: MessengerRNA in oocytes and embryos in relation to embryoviability. Theriogenology 68(Suppl. 1), S77–S83.Yang X, Smith SL, Tian XC, Lewin HA, Renard JP,Wakayama T, 2007: Nuclear reprogramming of clonedembryos and its implications for therapeutic cloning. NatGenet 39, 295–302.Zielak AE, Canty MJ, Forde N, Coussens PM, Smith GW,Lonergan P, Ireland JJ, Evans ACO, 2007a: Differentialexpression of genes for transcription factors in theca andgranulosa cells following selection of a dominant follicle incattle. Mol Reprod Dev 19, 967–975.Zielak AE, Forde N, Park SDE, Doohan F, Coussens PM,Smith GW, Ireland JJ, Lonergan P, Evans ACO, 2007b:Identification of novel genes associated with dominantfollicle development in cattle. Reprod Fertil Dev 19, 967–975.Author’s address (for correspondence): ACO Evans, UCD VeterinarySciences Centre, Belfield, Dublin 4, Ireland. E-mail: alex.evans@ucd.ieConflict of interest: All authors declare no conflict of interests.Ó 2008 The Authors. Journal compilation Ó 2008 Blackwell Verlag