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2390 J. Med. Plants Res.<br />

Table 1. Geographic localities and sample sizes of naturally distributed D. hatagirea.<br />

S/N Population name Population code Longitude Latitude Altitude (ft) Sample sizes<br />

1 Bogdang P N34°48'.198 E77°02'.453 9240 ± 25.8 10<br />

2 Skampuk Q N34°35'.238 E77°34'.481 10490 ± 17.4 15<br />

3 Skurru R N34°40'.229 E77°18'.031 10295 ± 20.8 15<br />

4 Hunder S N34°35'.043 E 77°28'.592 10357 ± 18.0 10<br />

5 Turtuk T N34°50'.849 E76°49'.720 9240 ± 25.8 10<br />

6 Tirith U N34°32'.378 E77°38'.481 10443 ± 26.9 10<br />

7 Sumur V N34°31'.128 E77°34'.481 10120 ± 12.7 10<br />

8 Changlung W N34°55'.884 E77°28'.276 10982 ± 39.7 10<br />

9 Staksha X N34°55'.885 E77°28'.276 11081 ± 49.2 6<br />

Table 2. List of primers used for RAPD amplification.<br />

Primer<br />

Primer sequence<br />

(5’ 3’)<br />

Total number of fragments amplified Percentage of polymorphic loci Resolving power<br />

S21 CAGGCCCTT C 597 100 12.44<br />

S22 TGCCGAGCT G 545 100 11.35<br />

S23 AGTCAGCCA C 341 100 7.10<br />

S24 AATCAGCCA C 566 88.9 11.79<br />

S25 AGGGGTCTT G 508 100 10.58<br />

S26 GGTCCCTGA C 530 100 11.04<br />

S27 GAAACGGGTG 423 100 8.81<br />

S28 GTGACGTAG G 512 80 10.67<br />

S29 GGGTAACGC C 362 100 7.54<br />

S30 GTGATCGCA G 287 100 5.98<br />

S31 CAATCGCCG T 485 100 10.10<br />

S32 TCGGCGATA G 410 100 8.54<br />

S33 CAGCACCCA C 558 100 11.63<br />

S34 TCTGTGCTG G 455 100 9.48<br />

S35 TTCCGAACC C 476 100 9.92<br />

S36 AGCCAGCGA A 310 100 6.46<br />

S37 GACCGCTTG T 459 100 9.56<br />

S38 AGGTGACCG T 511 100 10.65<br />

S39 CAAACGTCG G 380 100 7.91<br />

S40 GTTGCGATC C 430 100 8.96<br />

Total 9145 98.30 -<br />

each reaction before electrophoresis. After electrophoresis, the gels<br />

were documented on a gel documentation system (Alpha Innotech,<br />

Alphaimager, USA). Molecular size of the amplicon was estimated<br />

using 100 and 500 bp DNA ladders (‘Bangalore Genei.India’).<br />

Data analysis<br />

The resulting presence/absence binary data matrix was analyzed<br />

using POPGENE version 1.31 (Yeh et al., 1999). Jaccard’s<br />

similarity coefficient (J) was used to calculate genetic similarity<br />

between pair of individuals. The similarity matrix was subjected to<br />

cluster analysis by unweighted pair group method with arithmetic<br />

mean (UPGMA) using the SAHN clustering module and<br />

dendrogram was generated using the program NTSYS-pc software<br />

ver. 2.02 (Rohlf, 1992). POPGENE software version 1.31 was used<br />

to describe the structure of studied populations with their<br />

geographic location. Observed number of alleles (Na), effective<br />

number of alleles (Ne), Nei’s genetic diversity (H), Shannon’s<br />

information index (I), number of polymorphic loci (NPL) and<br />

percentage polymorphic loci (PPL) across were analyzed (Zhao et<br />

al., 2006).<br />

The non-parametric analysis of molecular variation (AMOVA)<br />

(Excoffier et al., 1992) was performed using squared Euclidean<br />

distances among all samples to partition the variation into two<br />

hierarchical levels; individual and population. GenAlEx software<br />

was used to calculate a principal coordinates analysis (PCA) that<br />

plots the relationship between distance matrix elements based on<br />

their first two principal coordinates (Peakall and Smouse, 2001).<br />

According to Prevost and Wilkinson (1999) the resolving power (Rp)<br />

of a primer is: Rp = Σ IB where IB (band informativeness) takes the<br />

value of: 1–[2* (0.5–P)], P being the proportion of the 96 genotypes

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