THESE Anne POSTEC Diversité de populations microbiennes ...

Bibliographie
A 1
Acinas, S. G., Marcelino, L. A., Klepac-Ceraj, V.
& Polz, M. F. (2004). Divergence and redundancy
of 16S rRNA sequences in genomes with multiple
rrn operons. J Bacteriol 186, 2629-2635.
Adams, M. W. W., Holden, J. F., Menon, A. L.,
Schut, G. J., Grunden, A. M., Hou, C.,
Hutchins, A. M., Jenney, F. E., Kim, C., Ma, K.
S., Pan, G. L., Roy, R., Sapra, R., Story, S. V. &
Verhagen, M. (2001). Key role for sulfur in
peptide metabolism and in regulation of three
hydrogenases in the hyperthermophilic archaeon
Pyrococcus furiosus. J Bacteriol 183, 716-724.
Alain, K., Marteinsson, V. T., Miroshnichenko, M.
L., Bonch-Osmolovskaya, E. A., Prieur, D. &
Birrien, J. L. (2002a). Marinitoga piezophila sp.
nov., a rod-shaped, thermo-piezophilic bacterium
isolated under high hydrostatic pressure from a
deep-sea hydrothermal vent. Int J Syst Evol
Microbiol 52, 1331-1339.
Alain, K., Olagnon, M., Desbruyeres, D., Page, A.,
Barbier, G., Juniper, S. K., Querellou, J. &
Cambon-Bonavita, M.-A. (2002b). Phylogenetic
characterization of the bacterial assemblage
associated with mucous secretions of the
hydrothermal vent polychaete Paralvinella
palmiformis. FEMS Microbiol Ecol 42, 463-476.
Alain, K., Pignet, P., Zbinden, M., Quillevere, M.,
Duchiron, F., Donval, J. P., Lesongeur, F.,
Raguenes, G., Crassous, P., Querellou, J. &
Cambon-Bonavita, M.-A. (2002c). Caminicella
sporogenes gen. nov., sp. nov., a novel
thermophilic spore-forming bacterium isolated
from an East-Pacific Rise hydrothermal vent. Int J
Syst Evol Microbiol 52, 1621-1628.
Alain, K., Querellou, J., Lesongeur, F., Pignet, P.,
Crassous, P., Raguenes, G., Cueff, V. &
Cambon-Bonavita, M.-A. (2002d). Caminibacter
hydrogeniphilus gen. nov., sp. nov., a novel
thermophilic, hydrogen-oxidizing bacterium
isolated from an East Pacific Rise hydrothermal
vent. Int J Syst Evol Microbiol 52, 1317-1323.
Alain, K., Rolland, S., Crassous, P., Lesongeur,
F., Zbinden, M., Le Gall, C., Godfroy, A., Page,
A., Juniper, S. K., Cambon-Bonavita, M.-A.,
Duchiron, F. & Querellou, J. (2003).
Desulfurobacterium crinifex sp. nov., a novel
thermophilic, pinkish-streamer forming,
chemolithoautotrophic bacterium isolated from a
Juan de Fuca Ridge hydrothermal vent and
amendment of the genus Desulfurobacterium.
Extremophiles 7, 361-370.
Alain, K., Zbinden, M., Le Bris, N., Lesongeur, F.,
Quérellou, J., Gaill, F. & Cambon-Bonavita, M.-
A. (2004). Early steps in microbial colonization
processes at deep-sea hydrothermal vents.
Environ Microbiol 6, 227–241.
Alazard, D., Dukan, S., Urios, A., Verhe, F.,
Bouabida, N., Morel, F., Thomas, P., Garcia, J.-
L. & Ollivier, B. (2003). Desulfovibrio
hydrothermalis sp. nov., a novel sulfate-reducing
1 Les références bibliographiques citées dans les
articles sont présentées à la fin de ces derniers et
ne figurent pas dans cette partie.
bacterium isolated from hydrothermal vents. Int J
Syst Evol Microbiol 53, 173-178.
Altschul, S. F., Gish, W., Miller, W., Meyers, E. W.
& Lipman, D. J. (1990). Basic Local Alignment
Search Tool. J Mol Biol 215, 403-410.
Amann, R. I., Krumholz, L. & Stahl, D. A. (1990).
Fluorescent-oligonucleotide probing of whole cells
for determinative, phylogenetic, and
environmental studies in microbiology. J Bacteriol
172, 762–770.
Amann, R. I., Ludwig, W. & Schleifer, K.-H.
(1995). Phylogenetic identification and in situ
detection of individual microbial cells without
cultivation. Microbiol Rev 59, 143-169.
Ampe, F., Ben Omar, N., Moizan, C., Wacher, C.
& Guyot, J. P. (1999). Polyphasic study of the
spatial distribution of microorganisms in Mexican
pozol, a fermented maize dough, demonstrates
the need for cultivation-independent methods to
investigate traditional fermentations. Appl Environ
Microbiol 65, 5464-5473.
Andrä, S., Frey, G., Nitsch, M., Baumeister, W. &
Stetter, K. O. (1996). Purification and structural
characterization of the thermosome from the
hyperthermophilic archaeum Methanopyrus
kandleri. FEBS lett 379, 127-131.
Antoine, E., Cilia, V., Meunier, J.-R., Guezennec,
J., Lesongeur, F. & Barbier, G. (1997).
Thermosipho melanesiensis sp. nov., a new
thermophilic anaerobic bacterium belonging the
the Thermotogales, isolated from deep-sea
hydrothermal vent in the southern Pacific ocean.
Int J System Bacteriol 47, 1118-1123.
Antoine, E., Guezennec, J., Meunier, J. R.,
Lesongeur, F. & Barbier, G. (1995). Isolation
and characterization of extremely thermophilic
archaebacteria related to the genus
Thermococcus from deep-sea hydrothermal
Guayamas basin. Curr Microbiol 31, 186-192.
Antoine, E., Rolland, J. L., Raffin, J. P. &
Dietrich, J. (1999). Cloning and over-expression
in Escherichia coli of the gene encoding NADPH
group III alcohol dehydrogenase from
Thermococcus hydrothermalis. Eur J Biochem
264, 880-889.
Arnold, H. P., Zillig, W., Ziese, U., Holz, I.,
Crosby, M., Utterback, T., Weidmann, J. F.,
Kristjanson, J. K., Klenk, H. P., Nelson, K. E. &
Fraser, C. M. (2000). A novel lipothrixvirus, SIFV,
of the extremely thermophilic Crenarchaeon
Sulfolobus. Virology 267, 252-266.
B
Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C.
R. & Wolfe, R. S. (1979). Methanogens:
reevaluation of a unique biological group.
Microbiol Rev 43, 260-296.
Barbier, G., Godfroy, A., Meunier, J.-R.,
Quérellou, J., Cambon, M.-A., Lesongeur, F.,
Grimont, P. A. D. & Raguénès, G. (1999).
Pyrococcus glycovorans, sp. nov., a
hyperthermophilic archaeon isolated from the
East Pacific Rise. Int J System Bacteriol 49,
1829-1837.
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