THESE Anne POSTEC Diversité de populations microbiennes ...

Bibliographie
Raguénès, G., Christen, R., Guezennec, J.,
Pignet, P. & Barbier, G. (1997). Vibrio
diabolicus, sp. nov. a new polysaccharidesecreting
organisms isolated from a deep-sea
hydrothermal vent polychate annelid, Alvinella
pompejana. Int J System Bacteriol 47, 989-995.
Raguénès, G., Meunier, J. R., Antoine, E.,
Godfroy, A., Caprais, J. C., Lesongeur, F.,
Guezennec, J. & Barbier, G. (1995). Biodiversité
d'Archaea hyperthermophiles de sites
hydrothermaux du Pacifique oriental. C R Acad
Sci Paris 318, 395-402.
Raguénes, G., Pignet, P., Gauthier, G., Peres, A.,
Christen, R., Rougeaux, H., Barbier, G. &
Guezennec, J. (1996). Description of a new
polymer-secreting bacterium from a deep-sea
hydrothermal vent, Alteromonas macleodii subsp.
fijiensis, and preliminary characterization of the
polymer. Appl Environ Microbiol 62, 67-73.
Ramade, F. 1993. Dictionnaire encyclopédique de
l'écologie et des Sciences de l'Environnement.
Ediscience International, Paris.
Ramakrishnan, V., Verhagen, M. & Adams, M.
(1997). Characterization of Di-myo-inositol-
1,1(prm1)-phosphate in the hyperthermophilic
bacterium Thermotoga maritima. Appl Environ
Microbiol 63, 347-350.
Raven, N. D. H. & Sharp, R. J. (1997).
Development of defined and minimal media for
the growth of the hyperthermophilic archaeon
Pyrococcus furiosus Vc1. FEMS Microbiol Lett
146, 135-141.
Raven, N., Ladwa, N. & Sharp, R. (1992).
Continuous culture of the hyperthermophilic
archaeum Pyrococcus furiosus. Appl Microbiol
Biotechnol 38, 263-267.
Reysenbach, A.-L., Longnecker, K. & Kirshtein,
J. (2000). Novel bacterial and archaeal lineages
from an in situ growth chamber deployed at a
Mid-Atlantic ridge hydrothermal vent. Appl
Environ Microbiol 66, 3798-3806.
Rieley, G., Dover, C. L. V., Hedrick, D. B. &
Eglinton, G. (1999). Trophic ecology of Rimicaris
exoculata: a combined lipid abundance/stable
isotope approach. Mar Biol 133, 495 - 499.
Rodriguez-Valera, F. (2004). Environmental
genomics, the big picture? FEMS Microbiol Lett
231, 153-158.
Rondon, M. R., August, P. R., Bettermann, A. D.,
Brady, S. F., Grossman, T. H., Liles, M. R.,
Loiacono, K. A., Lynch, B. A., MacNeil, I. A.,
Minor, C., Tiong, C. L., Gilman, M., Osburne, M.
S., Clardy, J., Handelsman, J. & Goodman, R.
M. (2000). Cloning the soil metagenome: a
strategy for accessing the genetic and functional
diversity of uncultured microorganisms. Appl
Environ Microbiol 66, 2541-2547.
Rossello Mora, R. & Amann, R. (2001). The
species concept for prokaryotes. FEMS Microbiol
Rev 25, 39-67.
Ruby, E. G. & Jannasch, H. W. (1982).
Physiological characteristics of Thiomicrospira
sp. strain L12 isolated from deep-sea
hydrothermal vents. J Bacteriol 149, 161-165.
S
Saitou, N. & Nei, M. (1987). The neighbor-joining
method: a new method for reconstructing
phylogenetic trees. Mol Biol Evol 4, 406-425.
Sako, Y., Nakagawa, S., Takai, K. & Horikoshi, K.
(2003). Marinithermus hydrothermalis gen. nov.,
sp. nov., a strictly aerobic, thermophilic bacterium
from a deep-sea hydrothermal vent chimney. Int J
Syst Evol Microbiol 53, 59-65.
Santos, H. & Da Costa, M. S. (2002). Compatible
solutes of organisms that live in hot saline
environments. Environ Microbiol 4, 501-509.
Scholz, S., Wolff, S. & Hensel, R. (1998). The
biosynthesis pathway of di-myo-inositol-1,1'-
phosphate in Pyrococcus woesei. FEMS Microbiol
Lett 168, 37-42.
Schrenk, M. O., Kelley, D. S., Bolton, S. A. &
Baross, J. A. (2004). Low archaeal diversity
linked to subseafloor geochemical processes at
the Lost City Hydrothermal Field, Mid-Atlantic
Ridge. Environ Microbiol 6, 1086-1095.
Schrenk, M. O., Kelley, D. S., Delaney, J. R. &
Baross, J. A. (2003). Incidence and diversity of
microorganisms within the walls of an active
deep-sea sulfide chimney. Appl Environ Microbiol
69, 3580-3592.
Schut, G. J., Brehm, S. D., Datta, S. & Adams, M.
W. W. (2003). Whole-genome DNA microarray
analysis of a hyperthermophile and an archaeon:
Pyrococcus furiosus grown on carbohydrates or
peptides. J Bacteriol 185, 3935-3947.
Schut, G. J., Zhou, J. & Adams, M. W. W. (2001).
DNA microarray analysis of the hyperthermophilic
archaeon Pyrococcus furiosus: evidence for a
new type of sulfur-reducing enzyme complex. J
Bacteriol 183, 7027-7036.
Segonzac, M. (1992). Les peuplements associés à
l'hydrothermalisme océanique de Snake Pit
(dorsale médio-atlantique; 23°N, 3480m) :
composition et microdistribution de la mégafaune.
C R Acad Sci Paris 314, 593-600.
Segonzac, M., De Saint Laurent, M. & Casanova,
B. (1993). L'énigme du comportement trophique
des crevettes Alvinocarididae des sites
hydrothermaux de la dorsale Médio-atlantique.
Cah Biol Mar 34, 535-571.
Sharp, R. J. & Raven, N. D. H. (1997). Isolation
and growth of hyperthermophiles, In P. M.
Rhodes and P. F. Stanbury (ed.), Applied
Microbial Physiology : A practical approach. IRL
Press, Oxford University press. p. 23-51
Slobodkin, A. I., Tourova, T. P., Kostrikina, N. A.,
Chernyh, N. A., Bonch-Osmolovskaya, E. A.,
Jeanthon, C. & Jones, B. E. (2003). Tepidibacter
thalassicus gen. nov., sp. nov., a novel
moderately thermophilic, anaerobic, fermentative
bacterium from a deep-sea hydrothermal vent. Int
J Syst Evol Microbiol 53, 1131-1134.
Slobodkin, A., Campbell, B., Cary, S. C., Bonch-
Osmolovkaya, E. A. & Jeanthon, C. (2001).
Evidence for the presence of thermophilic Fe(III)-
reducing microorganisms in deep-sea
hydrothermal vents at 13°N (East Pacific Rise).
FEMS Microbiol Ecol 36, 235-243.
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