Industrial Biotransformations

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528 Index of strain strain enzyme name EC number company page Enterobacter sp. Haloalkane dehalogenase 3.8.1.5 Daiso Co. Ltd., Japan 443 Erwinia carotovora Nucleosidase 3.2.2.1 Yamasa Corporation, Japan 335 Phosphorylase 2.4.2.2 Yamasa Corporation, Japan 335 Erwinia herbicola Tyrosine phenol lyase 4.1.99.2 Ajinomoto Co., Japan 461 Escherichia coli Aldehyde reductase 1.1.1.2 Lonza AG 174 Aspartase 4.3.1.1 BioCatalytics Inc., USA 494 Kyowa Hakko Kogyo Co., Ltd., Japan 496 l-Aspartase 4.3.1.1 Tanabe Seiyaku Co., Ltd., Japan 500 Carbonyl reductase 1.1.1.1 Kaneka Corporation, Japan 172 Carnitine dehydratase 4.2.1.89 Lonza AG, Switzerland 488 GlcNAc 2-epimerase 5.1.3.8 Marukin Shoyu Co., Ltd., Japan 506 Glutaryl amidase 3.1.1.41 Sanofi Aventis, France 326 N-Acetyl-d-neuraminic acid aldolase 4.1.3.3 Forschungszentrum Jülich GmbH, Germany GlaxoSmithKline, U.K. 457 Nitrilase 3.5.5.1 BASF AG, Germany 429 Oxygenase 1.14.13.44 Sigma Aldrich, USA 230 Penicillin acylase 3.5.1.11 DSM, The Netherlands 397 Penicillin amidase 3.5.1.11 Dr. Vig Medicaments, India 386 Eli Lilly, USA 393 Pfizer Inc., USA 395 Unifar, Turkey 388 Styrene monooxygenase 1.14.13.69 DSM, The Netherlands 235 Tryptophan synthase 4.2.1.20 Amino GmbH, Germany 472 Fusarium oxysporum Lactonase 3.1.1.25 Fuji Chemicals Industries Co., Ltd., Japan 321 Geotrichum candidum Dehydrogenase 1.1.X.X Bristol-Myers Squibb, USA 187 Gluconobacter oxydans d-Sorbitol dehydrogenase 1.1.99.21 Bayer AG, Germany 182 Pfizer Inc., USA 185 Hevea brasiliensis Oxynitrilase 4.1.2.39 DSM, The Netherlands 455 Klebsiella oxytoca Amidase 3.5.1.4 Lonza AG, Switzerland 382 Klebsiella terrigena Amidase 3.5.1.4 Lonza AG, Switzerland 379 Lactobacillus brevis Alcohol dehydrogenase 1.1.1.1 Wacker Chemie, Germany 170 Lactobacillus fermentum Urease 3.5.1.5. Asahi Kasei Chemicals Corporation, Japan 384 Lactobacillus kefiri Alcohol dehydrogenase 1.1.1.1 Jülich Fine Chemicals GmbH 167 Leuconostoc mesenteroides d-Lactate dehydrogenase 1.1.1.28 Pfizer Inc., USA 179 Microbial source Catalase 1.11.1.6 Novartis, Switzerland 217 Mucor miehei Lipase 3.1.1.3 Celltech Group plc, U.K. 284 Neurospora crassa Alcohol dehydrogenase 1.1.1.1 Zeneca Life Science Molecules, U.K. 153 459
strain enzyme name EC number Index of strain company page Nocardia autotropica Oxygenase 1.14.14.1 Merck Sharp & Dohme, USA 243 Nocardia corallina Monooxygenase 1.14.14.1 Nippon Mining Holdings, Inc., Japan 245 Nocardia salmonicolor SC 6310 Reductase 1.1.X.X Bristol-Myers Squibb, USA 199 Pichia methanolica Reductase 1.1.X.X Bristol-Myers Squibb, USA 195 Pig Pancreas Carboxypeptidase B 3.4.17.2 Eli Lilly, USA 344 Sanofi Aventis, France 346 Trypsin 3.4.21.4 Eli Lilly, USA 350 Novo Nordisk, Denmark 354 Sanofi Aventis, France 352 Porcine pancreas Lipase 3.1.1.3 DSM, The Netherlands 288 Protaminobacter rubrum a-Glucosyl transferase 5.4.99.11 Mitsui Seito Co., Ltd., Japan 512 Südzucker AG, Germany 512 Pseudomonas cepacia Lipase 3.1.1.3 Bristol-Myers Squibb, USA 277, 281, 311, 318 Pseudomonas chlororaphis Nitrile hydratase 4.2.1.84 DuPont, USA 478 Pseudomonas dacunhae Aspartate b-decarboxylase 4.1.1.12 Tanabe Seiyaku Co., Japan 451 Pseudomonas fluorescens Lipase 3.1.1.3 Celltech Group plc, U.K. 291 Pseudomonas oleovorans Oxidase 1.14.X.X DSM, The Netherlands 251 Pseudomonas pseudoalcaligenes Malease 4.2.1.31 DSM, The Netherlands 474 Pseudomonas putida Aminopeptidase 3.4.11.1 DSM, The Netherlands 337 Benzoate dioxygenase 1.14.12.10 ICI, U.K. 225 Dehalogenase 3.8.1.2 Astra Zeneca, U.K. 435 Monooxygenase 1.14.13.X Lonza AG, Switzerland 238 Naphthalene dioxygenase 1.13.11.11 Genencor International, Inc., USA 221 Pseudomonas putida ATCC 33015 Aryl alcohol dehydrogenase 1.1.1.90 Pfizer Inc., USA 233 Benzaldehyde dehydrogenase 1.2.1.28 Pfizer Inc., USA 233 Monooxygenases 1.14.13.62 Pfizer Inc., USA 233 Pseudomonas sp. Carbamoylase 3.5.1.77 Dr. Vig Medicaments, India 415 Glutaryl amidase 3.1.1.41 Asahi Kasei Chemical Industry Co., Ltd., Japan 330 Hydantoinase 3.5.2.4 Dr. Vig Medicaments, India 415 Rhodococcus erythropolis Alcohol dehydrogenase 1.1.1.1 Forschungszentrum Jülich GmbH, Germany 157 Oxidase 1.X.X.X International Bio Synthetics, Inc., The Netherlands 255 Rhodococcus rhodochrous Nitrile hydratase 4.2.1.84 Lonza AG, Switzerland 480 Nitto Chemical Industry Co., Ltd., Japan 481 529
Page 2 and 3:
Industrial Biotransformations Edite
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Industrial Biotransformations Secon
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Contents Preface to the first editi
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5 Basics of Bioreaction Engineering
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X Preface to the first edition many
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XII Preface to the second edition E
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XIV List of Contributors Prof. Dr.
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2 1 History of Industrial Biotransf
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10 1 History of Industrial Biotrans
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R' 16 O H N 1 History of Industrial
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38 2 The Enzyme Classification Tab.
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40 2 The Enzyme Classification trib
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42 2 The Enzyme Classification EC 1
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54 2 The Enzyme Classification 2.2.
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56 2 The Enzyme Classification The
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60 2 The Enzyme Classification in g
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62 2 The Enzyme Classification Refe
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64 3 Retrosynthetic Biocatalysis 3.
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66 3 Retrosynthetic Biocatalysis R
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76 3 Retrosynthetic Biocatalysis R
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78 3 Retrosynthetic Biocatalysis Wh
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88 3 Retrosynthetic Biocatalysis Re
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90 3 Retrosynthetic Biocatalysis (D
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4 Optimization of Industrial Enzyme
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4.2 Learning from Nature Nature its
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4.3 Enzyme Production Using Bacteri
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4.4 Improvements to Enzymes by Mole
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1 4.4 Improvements to Enzymes by Mo
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4.4 Improvements to Enzymes by Mole
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4.5 Identification of Improved Enzy
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4.5 Identification of Improved Enzy
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Galleron, N., Ghim, S.Y., Glaser, P
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ment, Relaxation, and Reversal of t
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81 Goddard, J.-P., Reymond, J.-L. 2
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5 Basics of Bioreaction Engineering
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where r p = selectivity to componen
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5.1 Definitions operoxidase (CPO) h
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5.1 Definitions The residence time
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5.1 Definitions In iso-electric pre
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5.2 Biocatalyst Kinetics formation
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5.2 Biocatalyst Kinetics K M values
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v ˆ V max ‰SŠ KM 1‡ ‰PŠ KI
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5.3 Basic Reactor Types and their M
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dx concentration [S] 0 [S] 1 [S] e
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5.4 Biocatalyst Recycling and Recov
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. better stability, especially towa
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5.4.2 Cross-linking 5.4 Biocatalyst
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. immobilization methods . substrat
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References Owing to the need for st
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40 Vuorilehto, K., Lütz, S., Wandr
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Common name of enzyme Name of strai
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Common name of enzyme Name of strai
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Acinetobacter
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Alcohol dehydrogenase Acinetobacter
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Dehydrogenase Zygosaccharomyces rou
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Alcohol dehydrogenase Lactobacillus
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Carbonyl reductase Escherichia coli
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Aldehyde reductase Escherichia coli
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Lactate dehydrogenase Staphylococcu
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d-Lactate dehydrogenase Leuconostoc
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d-Lactate dehydrogenase Leuconostoc
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d-Sorbitol dehydrogenase Gluconobac
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d-Sorbitol dehydrogenase Gluconobac
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Dehydrogenase Geotrichum candidum 1
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Ketoreductase 1 = ethyl-4-chloro-3-
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Dehydrogenase Candida sorbophila N
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Dehydrogenase Candida sorbophila N
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Reductase Pichia methanolica 1 = Et
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Reductase Aureobasidium pullulans S
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Reductase Nocardia salmonicolor SC
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Glutamate dehydrogenase / Glucose 1
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Leucine dehydrogenase Bacillus spha
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Leucine dehydrogenase Bacillus spha
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Phenylalanine dehydrogenase / Forma
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d-Aminoacid oxidase Trijonopsis var
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d-Amino acid oxidase Trigonopsis va
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Nicotinic acid hydroxylase Achromob
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Nicotinic acid hydroxylase Achromob
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Catalase Microbial source 1) Reacti
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Oxygenase Arthrobacter sp. 1) React
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Naphthalene dioxygenase Pseudomonas
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Naphthalene dioxygenase Pseudomonas
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Benzoate dioxygenase Pseudomonas pu
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Cyclohexanone monooxygenase Acineto
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Cyclohexanone monooxygenase Acineto
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Oxygenase Escherichia coli OH OH 1
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Monooxygenases / Aryl alcohol dehyd
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Styrene monooxygenase Escherichia c
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Styrene monooxygenase Escherichia c
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Monooxygenase Pseudomonas putida H
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Monooxygenase Streptomyces sp. SC 1
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Oxygenase Nocardia autotropica 1) R
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Monooxygenase Nocardia corallina 1
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Monooxygenase Nocardia corallina
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Monooxygenase Nocardia corallina O
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Oxidase Pseudomonas oleovorans 1) R
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Reductase Baker’s yeast 1 = oxois
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Oxidase Rhodococcus erythropolis 2
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Desaturase Rhodococcus sp. 1) React
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Desaturase Rhodococcus sp. 3) Flow
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Oxidase Beauveria bassiana 1) React
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Oxidase Beauveria bassiana ● The
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Cyclodextrin glycosyltransferase Ba
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d-Amino acid transaminase Bacillus
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d-Amino acid transaminase Bacillus
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Transaminase Bacillus megaterium 1)
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Lipase Burkholderia plantarii 2 (R,
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Lipase Burkholderia plantarii 3) Fl
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Lipase Pseudomonas cepacia 1 = cis-
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Lipase Pseudomonas cepacia 5) Produ
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Lipase Pseudomonas cepacia 2 F 1 =
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Lipase Pseudomonas cepacia 6) Liter
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Lipase Mucor miehei Fig. 3.1.1.3 -
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Lipase Mucor miehei 6) Literature E
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Lipase Porcine pancreas 5) Product
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Lipase Pseudomonas fluorescens Fig.
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Lipase Pseudomonas fluorescens O O
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Lipase Candida cylindracea ● In c
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Lipase Candida antarctica 2 F 1) Re
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Lipase Candida antarctica ● It sh
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Lipase Candida antarctica ● The p
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Lipase Candida antarctica 3) Flow s
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Lipase Arthrobacter sp. ● For thi
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Lipase Serratia marescens MeO R MeO
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Lipase Serratia marescens Fig. 3.1.
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Lipase Pseudomonas cepacia 1) React
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Lipase Candida antarctica 1) Reacti
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Lipase Candida antarctica 4) Proces
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-Galactosidase Saccharomyces lactis
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Lipase Pseudomonas cepacia ● The
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Lactonase Fusarium oxysporum 1 = pa
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Lactonase Fusarium oxysporum Fig. 3
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Lactonase Fusarium oxysporum 5) Pro
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Glutaryl amidase Escherichia coli F
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Glutaryl amidase Escherichia coli 6
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Glutaryl amidase Pseudomonas sp. 3)
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a-Amylase / Amyloglucosidase Bacill
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Nucleosidase / Phosphorylase Erwini
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Aminopeptidase Pseudomonas putida 1
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Aminopeptidase Pseudomonas putida
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Aminopeptidase Pseudomonas putida 3
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Aminopeptidase Pseudomonas putida
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Carboxypeptidase B Pig Pancreas 3)
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Trypsin Pig Pancreas 2) Remarks ●
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Subtilisin Bacillus licheniformis 1
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus sp. EtOOC (R/S)
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Subtilisin Bacillus sp. drug discov
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Subtilisin Bacillus lentus 1 = (R,S
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Thermolysin Bacillus thermoproteoly
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Thermolysin Bacillus thermoproteoly
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Amidase Comamonas acidovorans 1) Re
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Amidase Klebsiella terrigena 2 H N
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Amidase Klebsiella terrigena 6) Lit
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Amidase Klebsiella oxytoca company:
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Urease Lactobacillus fermentum ●
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Penicillin amidase Escherichia coli
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Penicillin amidase Bacillus megater
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Penicillin acylase Escherichia coli
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Aminoacylase Aspergillus niger 2 N
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Aminoacylase Aspergillus niger 3) F
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Aminoacylase Aspergillus oryzae S C
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Aminoacylase Aspergillus oryzae 3)
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d-Hydantoinase Bacillus brevis Fig.
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d-Hydantoinase Bacillus brevis 3) F
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Hydantoinase / Carbamoylase Pseudom
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l-Hydantoinase Arthrobacter sp. DSM
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l-Hydantoinase Arthrobacter sp. DSM
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-Lactamase Aureobacterium sp. 3) Fl
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-Lactamase Pseudomonas solanacearum
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Lactamase / Racemase Cryptococcus l
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Nitrilase Acidovorax facilis 1 = 2-
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Nitrilase Escherichia coli 1) React
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Nitrilase / Hydroxylase Agrobacteri
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Nitrilase / Hydroxylase Alcaligenes
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Dehalogenase Pseudomonas putida 1)
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Dehalogenase Pseudomonas putida 5)
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Enterobacte
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Halohydrin dehalogenase 1 = ethyl-(
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Pyruvate decarboxylase Saccharomyce
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Acetolactate decarboxylase Bacillus
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Aspartate b-decarboxylase Pseudomon
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Aspartate b-decarboxylase Pseudomon
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Oxynitrilase Hevea brasiliensis 1 =
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N-Acetyl-d-neuraminic acid aldolase
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N-Acetyl-d-neuraminic acid aldolase
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Tyrosine phenol lyase Erwinia herbi
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Fumarase Corynebacterium glutamicum
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Fumarase Corynebacterium glutamicum
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Fumarase Brevibacterium flavum 4) P
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Enoyl-CoA hydratase Candida rugosa
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Enoyl-CoA hydratase Candida rugosa
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Tryptophan synthase Escherichia col
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Malease Pseudomonas pseudoalcaligen
Page 488 and 489: Malease Pseudomonas pseudoalcaligen
Page 490 and 491: Nitrile hydratase Pseudomonas chlor
Page 492 and 493: Nitrile hydratase Rhodococcus rhodo
Page 500 and 501: Carnitine dehydratase Escherichia c
Page 506 and 507: Aspartase Escherichia coli 3) Flow
Page 508 and 509: Aspartase Escherichia coli 5) Produ
Page 510 and 511: Aspartase Brevibacterium flavum 3)
Page 512 and 513: l-Aspartase Escherichia coli 3) Flo
Page 514 and 515: l-Phenylalanine ammonia-lyase Rhodo
Page 516 and 517: Amino acid racemase Amycolatopsis o
Page 518 and 519: GlcNAc 2-epimerase Escherichia coli
Page 520 and 521: Xylose isomerase Bacillus coagulans
Page 522 and 523: Xylose isomerase Bacillus coagulans
Page 524 and 525: a-Glucosyl transferase Protaminobac
Page 526 and 527: 516 7 Quantitative Analysis of Indu
Page 532 and 533: 522 Index of enzyme name enzyme nam
Page 534 and 535: 524 Index of enzyme name enzyme nam
Page 536 and 537: 526 Index of strain strain enzyme n
Page 540 and 541: 530 Index of strain strain enzyme n
Page 542 and 543: 532 Index of company company strain
Page 544 and 545: 534 Index of company company strain
Page 546 and 547: 536 Index of starting material star
Page 556 and 557: 546 Index of product product enzyme
Page 566: 556 Index of product product enzyme
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Industrial Biotransformations

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