Industrial Biotransformations

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534 Index of company company strain enzyme name EC number Rhodococcus rhodochrous Nitrile hydratase 4.2.1.84 480 Marukin Shoyu Co., Ltd., Japan Escherichia coli GlcNAc 2-epimerase 5.1.3.8 506 Mercian Co., Ltd., Japan Bacillus circulans Cyclodextrin glycosyltransferase 2.4.1.19 264 Merck & Co., Inc., USA Candida sorbophila Dehydrogenase 1.1.X.X 191 Merck Sharp & Dohme, USA Nocardia autotropica Oxygenase 1.14.14.1 243 Mitsubishi Chemical Corporation, Japan Arthrobacter sp. Oxygenase 1.13.11.1 219 Brevibacterium flavum Aspartase 4.3.1.1 498 Mitsui Seito Co., Ltd., Japan Protaminobacter rubrum a-Glucosyl transferase 5.4.99.11 512 Nagase & Co., Ltd., Japan Bacillus coagulans/Streptomyces rubiginosus/Streptomyces phaechromogenes Xylose isomerase 5.3.1.5 508 Nippon Mining Holdings, Inc., Japan Nocardia corallina Monooxygenase 1.14.14.1 245 Nitto Chemical Industry Co., Ltd., Japan Rhodococcus rhodochrous Nitrile hydratase 4.2.1.84 481 Novartis, Switzerland Microbial source Catalase 1.11.1.6 217 Novo Nordisk, Denmark Bacillus brevis Acetolactate decarboxylase 4.1.1.5 449 Bacillus coagulans/ Streptomyces rubiginosus/ Streptomyces phaechromogenes Xylose isomerase 5.3.1.5 508 Pig Pancreas Trypsin 3.4.21.4 354 NSC Technologies, USA Bacillus sp. d-Amino acid transaminase 2.6.1.21 267 Pfizer Inc., USA Candida cylindracea Lipase 3.1.1.3 294 Escherichia coli Penicillin amidase 3.5.1.11 395 Gluconobacter oxydans ATCC 621 d-Sorbitol dehydrogenase 1.1.99.21 185 Leuconostoc mesenteroides d-Lactate dehydrogenase 1.1.1.28 179 Pseudomonas putida ATCC 33015 Aryl alcohol dehydrogenase 1.1.1.90 233 Benzaldehyde dehydrogenase 1.2.1.28 233 Monooxygenases 1.14.13.62 233 PGG Industries, USA Bacillus lentus Subtilisin 3.4.21.62 371 Sandoz AG, Switzerland Trijonopsis variabilis d-Aminoacid oxidase 1.4.3.3 209 Sanofi Aventis, France Escherichia coli Glutaryl amidase 3.1.1.41 326 Pig Pancreas Carboxypeptidase B 3.4.17.2 346 Trypsin 3.4.21.4 352 Schering Plough, USA Candida antarctica Lipase 3.1.1.3 297 Several companies Aspergillus niger Amyloglucosidase 3.2.1.3 332 Bacillus licheniformis a-Amylase 3.2.1.1 332 page
Index of company company strain enzyme name EC number Sigma Aldrich, USA Acinetobacter calcoaceticus Cyclohexanone monooxygenase 1.14.13.22 227 Escherichia coli Oxygenase 1.14.13.44 230 Snow Brand Milk Products Co., Ltd., Japan Saccharomyces lactis b-Galactosidase 3.2.1.23 316 Südzucker AG, Germany Protaminobacter rubrum a-Glucosyl transferase 5.4.99.11 512 Sumitomo Chemical Co., Japan Arthrobacter sp. Lipase 3.1.1.3 304 Saccharomyces lactis b-Galactosidase 3.2.1.23 316 Tanabe Seiyaku Co., Japan Brevibacterium flavum Fumarase 4.2.1.2 466 Pseudomonas dacunhae Aspartate b-decarboxylase 4.1.1.12 451 Escherichia coli l-Aspartase 4.3.1.1 500 Serratia marescens Lipase 3.1.1.3 306 Toray Industries Inc., Japan Achromobacter obae Racemase 5.1.1.15 424 Cryptococcus laurentii Lactamase 3.5.2.11 424 UNICHEMA Chemie BV, The Netherlands Candida antarctica Lipase 3.1.1.3 313 Unifar, Turkey Escherichia coli Penicillin amidase 3.5.1.11 388 Wacker Chemie, Germany Lactobacillus brevis Alcohol dehydrogenase 1.1.1.1 170 Yamasa Corporation, Japan Erwinia carotovora Nucleosidase 3.2.2.1 335 Phosphorylase 2.4.2.2 335 Zeneca Life Science Molecules, U.K. Neurospora crassa Alcohol dehydrogenase 1.1.1.1 153 535 page
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Industrial Biotransformations Edite
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Industrial Biotransformations Secon
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Contents Preface to the first editi
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5 Basics of Bioreaction Engineering
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X Preface to the first edition many
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XII Preface to the second edition E
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XIV List of Contributors Prof. Dr.
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2 1 History of Industrial Biotransf
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10 1 History of Industrial Biotrans
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R' 16 O H N 1 History of Industrial
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38 2 The Enzyme Classification Tab.
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40 2 The Enzyme Classification trib
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42 2 The Enzyme Classification EC 1
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54 2 The Enzyme Classification 2.2.
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56 2 The Enzyme Classification The
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60 2 The Enzyme Classification in g
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62 2 The Enzyme Classification Refe
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64 3 Retrosynthetic Biocatalysis 3.
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66 3 Retrosynthetic Biocatalysis R
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76 3 Retrosynthetic Biocatalysis R
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78 3 Retrosynthetic Biocatalysis Wh
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88 3 Retrosynthetic Biocatalysis Re
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90 3 Retrosynthetic Biocatalysis (D
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4 Optimization of Industrial Enzyme
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4.2 Learning from Nature Nature its
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4.3 Enzyme Production Using Bacteri
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4.4 Improvements to Enzymes by Mole
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1 4.4 Improvements to Enzymes by Mo
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4.4 Improvements to Enzymes by Mole
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4.5 Identification of Improved Enzy
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4.5 Identification of Improved Enzy
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Galleron, N., Ghim, S.Y., Glaser, P
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ment, Relaxation, and Reversal of t
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81 Goddard, J.-P., Reymond, J.-L. 2
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5 Basics of Bioreaction Engineering
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where r p = selectivity to componen
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5.1 Definitions operoxidase (CPO) h
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5.1 Definitions The residence time
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5.1 Definitions In iso-electric pre
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5.2 Biocatalyst Kinetics formation
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5.2 Biocatalyst Kinetics K M values
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v ˆ V max ‰SŠ KM 1‡ ‰PŠ KI
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5.3 Basic Reactor Types and their M
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dx concentration [S] 0 [S] 1 [S] e
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5.4 Biocatalyst Recycling and Recov
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. better stability, especially towa
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5.4.2 Cross-linking 5.4 Biocatalyst
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. immobilization methods . substrat
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References Owing to the need for st
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40 Vuorilehto, K., Lütz, S., Wandr
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Common name of enzyme Name of strai
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Common name of enzyme Name of strai
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Acinetobacter
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Alcohol dehydrogenase Acinetobacter
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Dehydrogenase Zygosaccharomyces rou
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Alcohol dehydrogenase Lactobacillus
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Carbonyl reductase Escherichia coli
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Aldehyde reductase Escherichia coli
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Lactate dehydrogenase Staphylococcu
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d-Lactate dehydrogenase Leuconostoc
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d-Lactate dehydrogenase Leuconostoc
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d-Sorbitol dehydrogenase Gluconobac
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d-Sorbitol dehydrogenase Gluconobac
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Dehydrogenase Geotrichum candidum 1
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Ketoreductase 1 = ethyl-4-chloro-3-
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Dehydrogenase Candida sorbophila N
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Dehydrogenase Candida sorbophila N
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Reductase Pichia methanolica 1 = Et
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Reductase Aureobasidium pullulans S
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Reductase Nocardia salmonicolor SC
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Glutamate dehydrogenase / Glucose 1
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Leucine dehydrogenase Bacillus spha
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Leucine dehydrogenase Bacillus spha
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Phenylalanine dehydrogenase / Forma
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d-Aminoacid oxidase Trijonopsis var
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d-Amino acid oxidase Trigonopsis va
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Nicotinic acid hydroxylase Achromob
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Nicotinic acid hydroxylase Achromob
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Catalase Microbial source 1) Reacti
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Oxygenase Arthrobacter sp. 1) React
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Naphthalene dioxygenase Pseudomonas
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Naphthalene dioxygenase Pseudomonas
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Benzoate dioxygenase Pseudomonas pu
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Cyclohexanone monooxygenase Acineto
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Cyclohexanone monooxygenase Acineto
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Oxygenase Escherichia coli OH OH 1
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Monooxygenases / Aryl alcohol dehyd
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Styrene monooxygenase Escherichia c
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Styrene monooxygenase Escherichia c
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Monooxygenase Pseudomonas putida H
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Monooxygenase Streptomyces sp. SC 1
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Oxygenase Nocardia autotropica 1) R
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Monooxygenase Nocardia corallina 1
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Monooxygenase Nocardia corallina
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Monooxygenase Nocardia corallina O
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Oxidase Pseudomonas oleovorans 1) R
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Reductase Baker’s yeast 1 = oxois
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Oxidase Rhodococcus erythropolis 2
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Desaturase Rhodococcus sp. 1) React
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Desaturase Rhodococcus sp. 3) Flow
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Oxidase Beauveria bassiana 1) React
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Oxidase Beauveria bassiana ● The
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Cyclodextrin glycosyltransferase Ba
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d-Amino acid transaminase Bacillus
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d-Amino acid transaminase Bacillus
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Transaminase Bacillus megaterium 1)
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Lipase Burkholderia plantarii 2 (R,
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Lipase Burkholderia plantarii 3) Fl
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Lipase Pseudomonas cepacia 1 = cis-
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Lipase Pseudomonas cepacia 5) Produ
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Lipase Pseudomonas cepacia 2 F 1 =
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Lipase Pseudomonas cepacia 6) Liter
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Lipase Mucor miehei Fig. 3.1.1.3 -
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Lipase Mucor miehei 6) Literature E
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Lipase Porcine pancreas 5) Product
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Lipase Pseudomonas fluorescens Fig.
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Lipase Pseudomonas fluorescens O O
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Lipase Candida cylindracea ● In c
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Lipase Candida antarctica 2 F 1) Re
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Lipase Candida antarctica ● It sh
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Lipase Candida antarctica ● The p
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Lipase Candida antarctica 3) Flow s
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Lipase Arthrobacter sp. ● For thi
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Lipase Serratia marescens MeO R MeO
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Lipase Serratia marescens Fig. 3.1.
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Lipase Pseudomonas cepacia 1) React
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Lipase Candida antarctica 1) Reacti
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Lipase Candida antarctica 4) Proces
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-Galactosidase Saccharomyces lactis
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Lipase Pseudomonas cepacia ● The
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Lactonase Fusarium oxysporum 1 = pa
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Lactonase Fusarium oxysporum Fig. 3
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Lactonase Fusarium oxysporum 5) Pro
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Glutaryl amidase Escherichia coli F
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Glutaryl amidase Escherichia coli 6
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Glutaryl amidase Pseudomonas sp. 3)
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a-Amylase / Amyloglucosidase Bacill
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Nucleosidase / Phosphorylase Erwini
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Aminopeptidase Pseudomonas putida 1
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Aminopeptidase Pseudomonas putida
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Aminopeptidase Pseudomonas putida 3
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Aminopeptidase Pseudomonas putida
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Carboxypeptidase B Pig Pancreas 3)
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Trypsin Pig Pancreas 2) Remarks ●
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Subtilisin Bacillus licheniformis 1
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus sp. EtOOC (R/S)
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Subtilisin Bacillus sp. drug discov
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Subtilisin Bacillus lentus 1 = (R,S
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Thermolysin Bacillus thermoproteoly
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Thermolysin Bacillus thermoproteoly
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Amidase Comamonas acidovorans 1) Re
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Amidase Klebsiella terrigena 2 H N
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Amidase Klebsiella terrigena 6) Lit
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Amidase Klebsiella oxytoca company:
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Urease Lactobacillus fermentum ●
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Penicillin amidase Escherichia coli
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Penicillin amidase Bacillus megater
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Penicillin acylase Escherichia coli
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Aminoacylase Aspergillus niger 2 N
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Aminoacylase Aspergillus niger 3) F
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Aminoacylase Aspergillus oryzae S C
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Aminoacylase Aspergillus oryzae 3)
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d-Hydantoinase Bacillus brevis Fig.
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d-Hydantoinase Bacillus brevis 3) F
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Hydantoinase / Carbamoylase Pseudom
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l-Hydantoinase Arthrobacter sp. DSM
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l-Hydantoinase Arthrobacter sp. DSM
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-Lactamase Aureobacterium sp. 3) Fl
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-Lactamase Pseudomonas solanacearum
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Lactamase / Racemase Cryptococcus l
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Nitrilase Acidovorax facilis 1 = 2-
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Nitrilase Escherichia coli 1) React
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Nitrilase / Hydroxylase Agrobacteri
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Nitrilase / Hydroxylase Alcaligenes
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Dehalogenase Pseudomonas putida 1)
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Dehalogenase Pseudomonas putida 5)
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Enterobacte
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Halohydrin dehalogenase 1 = ethyl-(
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Pyruvate decarboxylase Saccharomyce
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Acetolactate decarboxylase Bacillus
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Aspartate b-decarboxylase Pseudomon
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Aspartate b-decarboxylase Pseudomon
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Oxynitrilase Hevea brasiliensis 1 =
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N-Acetyl-d-neuraminic acid aldolase
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N-Acetyl-d-neuraminic acid aldolase
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Tyrosine phenol lyase Erwinia herbi
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Fumarase Corynebacterium glutamicum
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Fumarase Corynebacterium glutamicum
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Fumarase Brevibacterium flavum 4) P
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Enoyl-CoA hydratase Candida rugosa
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Enoyl-CoA hydratase Candida rugosa
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Tryptophan synthase Escherichia col
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Malease Pseudomonas pseudoalcaligen
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Malease Pseudomonas pseudoalcaligen
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Nitrile hydratase Pseudomonas chlor
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Nitrile hydratase Rhodococcus rhodo
Page 494 and 495: Nitrile hydratase Rhodococcus rhodo
Page 500 and 501: Carnitine dehydratase Escherichia c
Page 506 and 507: Aspartase Escherichia coli 3) Flow
Page 508 and 509: Aspartase Escherichia coli 5) Produ
Page 510 and 511: Aspartase Brevibacterium flavum 3)
Page 512 and 513: l-Aspartase Escherichia coli 3) Flo
Page 514 and 515: l-Phenylalanine ammonia-lyase Rhodo
Page 516 and 517: Amino acid racemase Amycolatopsis o
Page 518 and 519: GlcNAc 2-epimerase Escherichia coli
Page 520 and 521: Xylose isomerase Bacillus coagulans
Page 522 and 523: Xylose isomerase Bacillus coagulans
Page 524 and 525: a-Glucosyl transferase Protaminobac
Page 526 and 527: 516 7 Quantitative Analysis of Indu
Page 532 and 533: 522 Index of enzyme name enzyme nam
Page 534 and 535: 524 Index of enzyme name enzyme nam
Page 536 and 537: 526 Index of strain strain enzyme n
Page 542 and 543: 532 Index of company company strain
Page 546 and 547: 536 Index of starting material star
Page 556 and 557: 546 Index of product product enzyme
Page 566: 556 Index of product product enzyme
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Industrial Biotransformations

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