Industrial Biotransformations

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532 Index of company company strain enzyme name EC number Thermoactinomyces intermedius Trigonopsis variabilis ATCC 10679 page Formate dehydrogenase 1.2.1.2 207 Phenylalanine dehydrogenase 1.4.1.20 207 Glutamate dehydrogenase 1.4.1.3 201 d-Amino acid oxidase 1.4.3.3 211 Celgene Corporation, USA Bacillus megaterium Transaminase 2.6.1.X 271 Celltech Group plc, U.K. Aspergillus niger Aminoacylase 3.5.1.14 403 Aureobacterium sp. b-Lactamase 3.5.2.6 420 Mucor miehei Lipase 3.1.1.3 284 Pseudomonas fluorescens Lipase 3.1.1.3 291 Central del Latte, Italy Saccharomyces lactis b-Galactosidase 3.2.1.23 316 Ciba-Geigy, Switzerland Staphylococcus epidermidis Lactate dehydrogenase 1.1.1.28 176 Coca-Cola, USA Bacillus licheniformis Subtilisin 3.4.21.62 357 Daiso Co. Ltd., Japan Alcaligenes sp. or Pseudomonas sp. Haloalkane dehalogenase 3.8.1.5 439 Enterobacter sp. Haloalkane dehalogenase 3.8.1.5 443 Degussa AG, Germany Amycolatopsis orientalis subsp. lurida Amino acid racemase 5.1.1.10 504 Arthrobacter sp. DSM 9771 l-Hydantoinase 3.5.2.4 417 Aspergillus oryzae Aminoacylase 3.5.1.14 407 Bacillus sphaericus Leucine dehydrogenase 1.4.1.9 203 Dr. Vig Medicaments, India Arthrobacter viscosus Penicillin amidase 3.5.1.11 386 Escherichia coli Penicillin amidase 3.5.1.11 386 Pseudomonas sp. Carbamoylase 3.5.1.77 415 Hydantoinase 3.5.2.4 415 DSM, The Netherlands Bacillus coagulans/ Streptomyces rubiginosus/ Streptomyces phaechromogenes Xylose isomerase 5.3.1.5 508 Bacillus thermoproteolyticus Thermolysin 3.4.24.27 373 Escherichia coli Penicillin acylase 3.5.1.11 397 Styrene monooxygenase 1.14.13.69 235 Hevea brasiliensis Oxynitrilase 4.1.2.39 455 Porcine pancreas Lipase 3.1.1.3 288 Pseudomonas oleovorans Oxidase 1.14.X.X 251 Pseudomonas pseudoalcaligenes Malease 4.2.1.31 474 Pseudomonas putida Aminopeptidase 3.4.11.1 337 DuPont de Nemours & Co., USA Acidovorax facilis Nitrilase 3.5.5.1 427 DuPont, USA Pseudomonas chlororaphis Nitrile hydratase 4.2.1.84 478 Eli Lilly, USA Escherichia coli Penicillin amidase 3.5.1.11 393 Pig Pancreas Carboxypeptidase B 3.4.17.2 344 Trypsin 3.4.21.4 350
Index of company company strain enzyme name EC number Zygosaccharomyces rouxii Dehydrogenase 1.1.1.1 164 Finnsugar, Finland Bacillus coagulans/ Streptomyces rubiginosus/ Streptomyces phaechromogenes Xylose isomerase 5.3.1.5 508 Forschungszentrum Jülich Escherichia coli N-Acetyl-d-neuraminic acid 4.1.3.3 459 GmbH, Germany aldolase Rhodococcus erythropolis Alcohol dehydrogenase 1.1.1.1 157 Fuji Chemicals Industries Co., Ltd., Japan Fusarium oxysporum Lactonase 3.1.1.25 321 Genencor International, Inc., USA Pseudomonas putida Naphthalene dioxygenase 1.13.11.11 221 Genex Corporation, USA Rhodotorula rubra l-Phenylalanine ammonialyase 4.3.1.5 502 GlaxoSmithKline, U.K. Candida antarctica Lipase 3.1.1.3 300, 302 Escherichia coli N-Acetyl-d-neuraminic acid aldolase 4.1.3.3 457 Hoffmann La-Roche AG, Switzerland Bacillus licheniformis Subtilisin 3.4.21.62 360, 364 Bacillus sp. Subtilisin 3.4.21.62 367 Baker’s yeast Reductase 1.X.X.X 253 ICI, U.K. Pseudomonas putida Benzoate dioxygenase 1.14.12.10 225 International Bio Synthetics, Inc., The Netherlands Rhodococcus erythropolis Oxidase 1.X.X.X 255 Jülich Fine Chemicals GmbH Lactobacillus kefiri Alcohol dehydrogenase 1.1.1.1 167 Kanegafuchi Chemical Industries Co., Ltd., Japan Bacillus brevis d-Hydantoinase 3.5.2.2 411 Candida rugosa Enoyl-CoA hydratase 4.2.1.17 468, 470 Kaneka Corporation, Japan Escherichia coli Carbonyl reductase 1.1.1.1 172 Kao Corp., Japan Rhodococcus sp. Desaturase 1.X.X.X 257 Krebs Biochemicals & Industries Ltd., India Saccharomyces cerevisiae Pyruvate decarboxylase 4.1.1.1 447 Kyowa Hakko Kogyo Co., Ltd., Japan Escherichia coli Aspartase 4.3.1.1 496 Lonza AG, Switzerland Achromobacter xylosoxidans Nicotinic acid hydroxylase 1.5.1.13 213 Agrobacterium sp. Hydroxylase 1.5.1.13 430 Nitrilase 3.5.5.1 430 Alcaligenes faecalis Hydroxylase 1.5.1.13 433 Nitrilase 3.5.5.1 433 Comamonas acidovorans Amidase 3.5.1.4 377 Escherichia coli Aldehyde reductase 1.1.1.2 174 Escherichia coli Carnitine dehydratase 4.2.1.89 488 Klebsiella oxytoca Amidase 3.5.1.4 382 Klebsiella terrigena Amidase 3.5.1.4 379 Pseudomonas putida Monooxygenase 1.14.13.X 238 533 page
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Industrial Biotransformations Edite
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Industrial Biotransformations Secon
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Contents Preface to the first editi
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5 Basics of Bioreaction Engineering
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X Preface to the first edition many
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XII Preface to the second edition E
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XIV List of Contributors Prof. Dr.
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2 1 History of Industrial Biotransf
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10 1 History of Industrial Biotrans
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R' 16 O H N 1 History of Industrial
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38 2 The Enzyme Classification Tab.
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40 2 The Enzyme Classification trib
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42 2 The Enzyme Classification EC 1
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54 2 The Enzyme Classification 2.2.
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56 2 The Enzyme Classification The
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60 2 The Enzyme Classification in g
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62 2 The Enzyme Classification Refe
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64 3 Retrosynthetic Biocatalysis 3.
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66 3 Retrosynthetic Biocatalysis R
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76 3 Retrosynthetic Biocatalysis R
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78 3 Retrosynthetic Biocatalysis Wh
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88 3 Retrosynthetic Biocatalysis Re
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90 3 Retrosynthetic Biocatalysis (D
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4 Optimization of Industrial Enzyme
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4.2 Learning from Nature Nature its
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4.3 Enzyme Production Using Bacteri
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4.4 Improvements to Enzymes by Mole
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1 4.4 Improvements to Enzymes by Mo
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4.4 Improvements to Enzymes by Mole
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4.5 Identification of Improved Enzy
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4.5 Identification of Improved Enzy
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Galleron, N., Ghim, S.Y., Glaser, P
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ment, Relaxation, and Reversal of t
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81 Goddard, J.-P., Reymond, J.-L. 2
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5 Basics of Bioreaction Engineering
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where r p = selectivity to componen
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5.1 Definitions operoxidase (CPO) h
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5.1 Definitions The residence time
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5.1 Definitions In iso-electric pre
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5.2 Biocatalyst Kinetics formation
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5.2 Biocatalyst Kinetics K M values
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v ˆ V max ‰SŠ KM 1‡ ‰PŠ KI
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5.3 Basic Reactor Types and their M
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dx concentration [S] 0 [S] 1 [S] e
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5.4 Biocatalyst Recycling and Recov
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. better stability, especially towa
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5.4.2 Cross-linking 5.4 Biocatalyst
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. immobilization methods . substrat
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References Owing to the need for st
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40 Vuorilehto, K., Lütz, S., Wandr
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Common name of enzyme Name of strai
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Common name of enzyme Name of strai
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Neurospora cr
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Rhodococcus e
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Alcohol dehydrogenase Acinetobacter
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Alcohol dehydrogenase Acinetobacter
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Dehydrogenase Zygosaccharomyces rou
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Alcohol dehydrogenase Lactobacillus
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Carbonyl reductase Escherichia coli
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Aldehyde reductase Escherichia coli
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Lactate dehydrogenase Staphylococcu
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d-Lactate dehydrogenase Leuconostoc
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d-Lactate dehydrogenase Leuconostoc
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d-Sorbitol dehydrogenase Gluconobac
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d-Sorbitol dehydrogenase Gluconobac
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Dehydrogenase Geotrichum candidum 1
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Ketoreductase 1 = ethyl-4-chloro-3-
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Dehydrogenase Candida sorbophila N
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Dehydrogenase Candida sorbophila N
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Reductase Pichia methanolica 1 = Et
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Reductase Aureobasidium pullulans S
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Reductase Nocardia salmonicolor SC
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Glutamate dehydrogenase / Glucose 1
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Leucine dehydrogenase Bacillus spha
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Leucine dehydrogenase Bacillus spha
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Phenylalanine dehydrogenase / Forma
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d-Aminoacid oxidase Trijonopsis var
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d-Amino acid oxidase Trigonopsis va
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Nicotinic acid hydroxylase Achromob
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Nicotinic acid hydroxylase Achromob
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Catalase Microbial source 1) Reacti
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Oxygenase Arthrobacter sp. 1) React
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Naphthalene dioxygenase Pseudomonas
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Naphthalene dioxygenase Pseudomonas
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Benzoate dioxygenase Pseudomonas pu
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Cyclohexanone monooxygenase Acineto
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Cyclohexanone monooxygenase Acineto
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Oxygenase Escherichia coli OH OH 1
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Monooxygenases / Aryl alcohol dehyd
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Styrene monooxygenase Escherichia c
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Styrene monooxygenase Escherichia c
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Monooxygenase Pseudomonas putida H
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Monooxygenase Streptomyces sp. SC 1
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Oxygenase Nocardia autotropica 1) R
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Monooxygenase Nocardia corallina 1
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Monooxygenase Nocardia corallina
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Monooxygenase Nocardia corallina O
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Oxidase Pseudomonas oleovorans 1) R
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Reductase Baker’s yeast 1 = oxois
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Oxidase Rhodococcus erythropolis 2
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Desaturase Rhodococcus sp. 1) React
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Desaturase Rhodococcus sp. 3) Flow
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Oxidase Beauveria bassiana 1) React
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Oxidase Beauveria bassiana ● The
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Cyclodextrin glycosyltransferase Ba
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d-Amino acid transaminase Bacillus
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d-Amino acid transaminase Bacillus
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Transaminase Bacillus megaterium 1)
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Lipase Burkholderia plantarii 2 (R,
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Lipase Burkholderia plantarii 3) Fl
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Lipase Pseudomonas cepacia 1 = cis-
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Lipase Pseudomonas cepacia 5) Produ
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Lipase Pseudomonas cepacia 2 F 1 =
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Lipase Pseudomonas cepacia 6) Liter
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Lipase Mucor miehei Fig. 3.1.1.3 -
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Lipase Mucor miehei 6) Literature E
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Lipase Porcine pancreas 5) Product
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Lipase Pseudomonas fluorescens Fig.
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Lipase Pseudomonas fluorescens O O
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Lipase Candida cylindracea ● In c
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Lipase Candida antarctica 2 F 1) Re
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Lipase Candida antarctica ● It sh
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Lipase Candida antarctica ● The p
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Lipase Candida antarctica 3) Flow s
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Lipase Arthrobacter sp. ● For thi
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Lipase Serratia marescens MeO R MeO
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Lipase Serratia marescens Fig. 3.1.
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Lipase Pseudomonas cepacia 1) React
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Lipase Candida antarctica 1) Reacti
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Lipase Candida antarctica 4) Proces
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-Galactosidase Saccharomyces lactis
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Lipase Pseudomonas cepacia ● The
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Lactonase Fusarium oxysporum 1 = pa
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Lactonase Fusarium oxysporum Fig. 3
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Lactonase Fusarium oxysporum 5) Pro
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Glutaryl amidase Escherichia coli F
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Glutaryl amidase Escherichia coli 6
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Glutaryl amidase Pseudomonas sp. 3)
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a-Amylase / Amyloglucosidase Bacill
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Nucleosidase / Phosphorylase Erwini
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Aminopeptidase Pseudomonas putida 1
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Aminopeptidase Pseudomonas putida
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Aminopeptidase Pseudomonas putida 3
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Aminopeptidase Pseudomonas putida
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Carboxypeptidase B Pig Pancreas 3)
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Trypsin Pig Pancreas 2) Remarks ●
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Subtilisin Bacillus licheniformis 1
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus licheniformis
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Subtilisin Bacillus sp. EtOOC (R/S)
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Subtilisin Bacillus sp. drug discov
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Subtilisin Bacillus lentus 1 = (R,S
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Thermolysin Bacillus thermoproteoly
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Thermolysin Bacillus thermoproteoly
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Amidase Comamonas acidovorans 1) Re
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Amidase Klebsiella terrigena 2 H N
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Amidase Klebsiella terrigena 6) Lit
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Amidase Klebsiella oxytoca company:
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Urease Lactobacillus fermentum ●
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Penicillin amidase Escherichia coli
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Penicillin amidase Bacillus megater
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Penicillin acylase Escherichia coli
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Aminoacylase Aspergillus niger 2 N
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Aminoacylase Aspergillus niger 3) F
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Aminoacylase Aspergillus oryzae S C
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Aminoacylase Aspergillus oryzae 3)
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d-Hydantoinase Bacillus brevis Fig.
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d-Hydantoinase Bacillus brevis 3) F
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Hydantoinase / Carbamoylase Pseudom
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l-Hydantoinase Arthrobacter sp. DSM
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l-Hydantoinase Arthrobacter sp. DSM
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-Lactamase Aureobacterium sp. 3) Fl
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-Lactamase Pseudomonas solanacearum
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Lactamase / Racemase Cryptococcus l
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Nitrilase Acidovorax facilis 1 = 2-
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Nitrilase Escherichia coli 1) React
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Nitrilase / Hydroxylase Agrobacteri
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Nitrilase / Hydroxylase Alcaligenes
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Dehalogenase Pseudomonas putida 1)
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Dehalogenase Pseudomonas putida 5)
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Alcaligenes
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Haloalkane dehalogenase Enterobacte
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Halohydrin dehalogenase 1 = ethyl-(
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Pyruvate decarboxylase Saccharomyce
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Acetolactate decarboxylase Bacillus
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Aspartate b-decarboxylase Pseudomon
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Aspartate b-decarboxylase Pseudomon
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Oxynitrilase Hevea brasiliensis 1 =
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N-Acetyl-d-neuraminic acid aldolase
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N-Acetyl-d-neuraminic acid aldolase
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Tyrosine phenol lyase Erwinia herbi
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Fumarase Corynebacterium glutamicum
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Fumarase Corynebacterium glutamicum
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Fumarase Brevibacterium flavum 4) P
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Enoyl-CoA hydratase Candida rugosa
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Enoyl-CoA hydratase Candida rugosa
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Tryptophan synthase Escherichia col
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Malease Pseudomonas pseudoalcaligen
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Malease Pseudomonas pseudoalcaligen
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Nitrile hydratase Pseudomonas chlor
Page 492 and 493: Nitrile hydratase Rhodococcus rhodo
Page 500 and 501: Carnitine dehydratase Escherichia c
Page 506 and 507: Aspartase Escherichia coli 3) Flow
Page 508 and 509: Aspartase Escherichia coli 5) Produ
Page 510 and 511: Aspartase Brevibacterium flavum 3)
Page 512 and 513: l-Aspartase Escherichia coli 3) Flo
Page 514 and 515: l-Phenylalanine ammonia-lyase Rhodo
Page 516 and 517: Amino acid racemase Amycolatopsis o
Page 518 and 519: GlcNAc 2-epimerase Escherichia coli
Page 520 and 521: Xylose isomerase Bacillus coagulans
Page 522 and 523: Xylose isomerase Bacillus coagulans
Page 524 and 525: a-Glucosyl transferase Protaminobac
Page 526 and 527: 516 7 Quantitative Analysis of Indu
Page 532 and 533: 522 Index of enzyme name enzyme nam
Page 534 and 535: 524 Index of enzyme name enzyme nam
Page 536 and 537: 526 Index of strain strain enzyme n
Page 544 and 545: 534 Index of company company strain
Page 546 and 547: 536 Index of starting material star
Page 556 and 557: 546 Index of product product enzyme
Page 566: 556 Index of product product enzyme
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Industrial Biotransformations

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