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netLibrary - eBook Summary Structure-based Drug Design by ...

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Page 136<br />

(Ser 20, Ser 277). This clearly demonstrated that Cys 20 and Cys 277 are the only sulfhydryls available for<br />

crosslinking receptor-bound bradykinin. These results provided direct biochemical evidence that the Nterminus<br />

of bradykinin, when bound to the B2 receptor, is adjacent to extracellular loop 3 and the Nterminal<br />

domain in the receptor.<br />

Further consideration of the model led to the hypothesis that agonist peptides may minimally require an<br />

intact C-terminal β-turn structure with appropriate side chains in place and N-terminal amino and<br />

guanidine groups for primary electrostatic interaction(s) with Asp286 and Asp268 in extracellular loop 3.<br />

As a test of this hypothesis, the prototypical second generation antagonist, NPC 18545, (DArg0-Arg1- Pro2-Hyp3-Gly4-Phe5-Ser6-DTic7-Oic8-Arg9) was modified such that residues 2–5 were replaced <strong>by</strong> a<br />

simple twelve carbon chain spacer (12-aminotridecanoic acid). The resulting compound, NPC 18325,<br />

contains only the appropriately charged moieties at the N-terminus, separated <strong>by</strong> a simple organic spacer<br />

moiety from a known β turn forming tetrapeptide [25,26]. This pseudopeptide was tested in the human<br />

bradykinin B2 receptor binding assay and found to have a Ki of 44 nM against [ 3H]bradykinin binding<br />

[50]. Functionally, this pseudopeptide was an agonist as measured <strong>by</strong> its ability to stimulate IP<br />

production in a stable CHO cell line expressing the human B2 receptor and in WI-38 cells. Since it was<br />

designed on the basis of an agonist site on the receptor, this result was not completely surprising despite<br />

the incorporation of the DTic-Oic pair at the C-terminus that previously had been shown to be critical in<br />

high affinity antagonists.<br />

Subsequently the length of the linear carbon chain was varied to further explore the hypothesis that the<br />

agonist site on the receptor had two domains, a hydrophilic site in the extracellular loop area and a<br />

hydrophobic domain in the transmembrane area [50]. Presumably, the two terminal portions of NPC<br />

18325 can only simultaneously interact with each putative domain of the receptor binding site when the<br />

carbon chain is 12–13 methylenes long. But if the carbon chain length is shortened too far, this ligand<br />

might be unable to simultaneously interact with both domains, resulting in an affinity loss. This series of<br />

pseudopeptides and their respective human bradykinin B2 receptor affinities are presented in Table 3.<br />

The data are consistent with the hypotyhesis since the receptor affinity decreases as the carbon chain<br />

length is shortened. An alternative explanation of the data is that a certain hydrophobicity profile is<br />

required of the compounds in this series for good receptor affinity. These results indicated that there<br />

may be additional hydrophobic or flexibility prerequisites to binding in this series of pseudopeptides.<br />

One noteworthy observation was that NPC 18325 showed divergent behavior when evaluated against<br />

different species homologues of the bradykinin B2 receptor. Notably, in the guinea pig ileal membrane<br />

preparation assay, the affinity for the receptor was approximately 10-fold less than what had been<br />

http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_136.html [4/5/2004 4:59:41 PM]

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