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Document Page 393 70. Banks RD, Blake CC, Evans PR, Haser R, Rice DW, Hardy GW, Merrett M, Phillips AW. Sequence, structure, and activity of phosphoglycerate kinase: a possible hinge-bending enzyme. Nature 1979; 279:773–777. 71. Misset O, Opperdoes FR. The phosphoglycerate kinases from Trypanosoma brucei. A comparison of the glycosomal and the cyosolic isoenzymes and their sensitivity towards suramin. Eur J Biochem 1987; 162:493–500. 72. Osinga KA, Swinkels BW, Gibson WC, Borst P, Veeneman GH, Van Boom JH, Michels PAM, Opperdoes FR. Topogenesis of microbody enzymes: a sequence comparison of the genes for the glycosomal (microbody) and cytosolic phosphoglycerate kinases of Trypanosoma brucei. EMBO J 1985; 4:3811–3817. 73. Verlinde CLMJ, Pijning T, Kalk KH, Van Calenbergh S, Van Aerschot A, Herdewijn P, Callens M, Michels P, Opperdoes FR, Wierenga RK, Hol WGJ. Protein structure-based inhibitor design: towards new drugs for sleeping sickness. In: Testa B, Kyburz E, Fuhrer W, Giger R, eds. Perspectives in Medicinal Chemistry. Basel: Verlag Helvetica Chimica Acta, 1993:135–148. 74. Goodford PJ. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J Med Chem 1985; 28:849–857. 75. Miranker A, Karplus M. Functionality maps of binding sites: a multiple copy simultaneous search method. Proteins: Struct, Funct, and Genetics 1991; 11:29–34. 76. Tronrud DE, Ten Eyck LF, Matthews BA. An efficient general-purpose least- squares refinement program for macromolecules. Acta Cryst A 1987; 43:489–501. 77. Read RJ. Improved coefficients for maps using phases from partial structures with errors. Acta Cryst A 1986; 42:140–149. 78. Kuntz ID. Structure-based strategies for drug design and discovery. Science 1992; 257:1078–1082. 79. Meng EC, Shoichet BK, Kuntz ID. Automated docking with grid-based energy evaluation. J Comput Chem 1992; 13:505–524. 80. ACD-3D. MDL Information Systems Inc, San Leandro, California. 81. Rappé AK, Goddard WA III. Charge equilibration for molecular dynamics simulations. J Phys Chem 1991; 95:3358–3363. 82. BIOGRAF. Molecular Simulations Inc, Burlington, Massachusetts. 83. Shoichet BK, Bodian DL, Kuntz ID. Molecular docking using shape descriptors. J Comput Chem 1992; 13:380–397. http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_393.html (1 of 2) [4/5/2004 5:43:57 PM]
Document 84. Verlinde CLMJ, Hol WGJ. Structure-based drug design: progress, results and challenges. Struct 1994; 2:577–587. 85. Gilson MK, Sharp KA, Honig BH. Calculating the electrostatic potential of molecules in solution: method and error assessment. J Comput Chem 1987; 9:327–335. 86. João HC, Williams RJP, Littlechild JA, Nagasuma R, Watson HC. An investigation of large inhibitors binding to phosphoglycerate kinase and their effect on anion activation. Eur J Biochem 1992; 205:1077–1088. 88. Bernstein B et al., unpublished results. 87. Boyle HA, Fairbrother WJ, Williams RJP. An NMR analysis of inhibitors to yeast phosphoglycerate kinase. Eur J Biochem 1989; 184:535–543. 89. Fothergill-Gilmore LA, Michels PAM. Evolution of glycolysis. Prog Biophys Mol Biol 1993; 59:105–235. http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_393.html (2 of 2) [4/5/2004 5:43:57 PM]
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Structure-based Drug Design 14 Stru
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Document We determined the structur
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Page 519 and 520: Document Figure 13 The identified p
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Document Acknowledgments Page 620 I
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Document Med Biol 1991; 306:9-21; (
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Document Page 629 ML, Clare M, Decr
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Document Page 631 197. Musil D, Zuc
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Document factors, 247 Combination t
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Document Cyclotheonamide A (CtA), 2
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Document D ddI, 152 tumour necrosis
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Document antistasin peptides, 281 c
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Document fragment-based programs, 5
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Document [Human immunodeficiency vi
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Document [Protease targets] serinyl
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