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Figure 8<br />

Minimized structure of a putative ligand suggested <strong>by</strong> CCLD (thick lines).<br />

The CCLD run used MCSS minima of benzamidine, benzene, cyclopentane, and<br />

cyclohexane. The putative ligand was minimized in the thrombin active site, whose residues<br />

within 8 Å of any atom of the ligand were allowed to move. The remaining residues of<br />

thrombin were kept rigid. The NAPAP structure is also shown (thin lines) as a basis of<br />

comparison.<br />

http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_554.html (1 of 2) [4/9/2004 12:53:32 AM]<br />

Page 554

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