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Document Figure 4 Richardson-style diagram of the polypeptide backbone of the individual structure of AP-A [46] that is closest to the average over the whole molecule. The locations of the sulfurs in the three disulfide bonds (4–46, 6–36, and 29–47) are shown in CPK format. The locations of reverse turns found in more than half the NMR-derived structures (6–9, 25–28, and 30–33) are indicated by darker backbone shading. The diagram was generated using MOLSCRIPT [51]. Page 302 four-stranded, antiparallel β-sheet linked by three loops, as illustrated for AP-A in Figure 4. The first of these loops, spanning residues 8–16 in AP-A and 8–17 in AP-B, is the largest and least well defined in solution (Figure 5), although it contains several residues that are essential for activity, as described in the next section. Differences between the structures of AP-A, ATX Ia, and Sh I have been noted [46] but the overall picture that emerges is one of similar backbone folds for all three molecules, making it likely that differences among the potencies and species-specificities of these toxins are due to the presence or absence of particular side chains rather than significant structural differences. Given that ATX Ia and Sh I have weak or negligible activities on mammalian nerve and heart tissue [24,27], we have focused on the anthopleurins in an effort to define the structure of the cardioactive pharmacophore of the sea anemone polypeptides. There are several challenges in this endeavor. One is that the structures are based on NMR data that, because of the paucity of NOE restraints for surface residues compared with those in the core of the structure, do not define the locations of the solvent-exposed side chains very precisely (although it should be borne in mind that this may be a more accurate picture of the actual structure in solution than one in which the side chains are fixed in a single http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_302.html (1 of 2) [4/5/2004 5:21:58 PM]
Document Figure 5 Stereo views of 20 structures of AP-B [47] superimposed over the backbone heavy atoms (N, C α , C) of residues 2–7 and 17–49. The three disulfide bonds are shown in lighter shading. The lower view is related to the upper one by an approximately 180° rotation about the vertical axis. http://legacy.netlibrary.com/nlreader/nlReader.dll?bookid=12640&filename=Page_303.html (1 of 2) [4/5/2004 5:23:22 PM] Page 303
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Structure-based Drug Design 14 Stru
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Document 2 Structural Studies of HI
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Document Analysis of various HIV-1
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Document Page 54 Table 2) [12,54].
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Document Table 3 HIV-1 RT Amino Aci
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Document ever, once an NNRTI is bou
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Document Page 67 Biochemical data s
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Document Chris Tantillo. The work i
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Document Page 72 16. Goldman ME, Nu
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Document 30. Coffin JM. HIV populat
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Document 45. Majumadar C, Abbotts J
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Document reverse transcriptase inhi
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Document 106. Cirino NM, Cameron CE
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Document 122. Marshall WS, Beaton G
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Document dine) and didanosine (dide
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Document 163. Lacey SF, Larder BA.
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Document Figure 8 Molscript stereo
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Document Page 106 on the same ring
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Document Page 108 mulate during tre
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Document 4 Bradykinin Receptor Anta
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Document Page 121 Nearly all cells
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Document Page 125 binding site on t
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Document receptor, it has not yet b
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Document Figure 6 Rat and human B2
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Document Figure 9 Composition of te
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Document We determined the structur
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Document References 1. Parks RE Jr.
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Document 17. Ealick SE, Rule SA, Ca
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Document 6 Structural Implications
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Document Page 176 0.43 Å) as the c
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Document Page 202 269, and valine-2
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Page 363 and 364: Document 12 Polypeptide Modulators
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Page 415 and 416: Document 17. Szelke M. Chemistry of
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Document Page 398 with growth hormo
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Document All effects of the IL-1 fa
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Document Table 1 Approval Indicatio
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Document Page 438 proteins. One pot
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Document II. Type IFNs A great deal
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Document Page 441 sequence of the m
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Document Figure 4 Stereo view of IF
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Document Figure 5 Velcro-key model
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Document Page 476 nM, respectively.
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Document Subsequent studies have sh
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Document Page 495 of the RNA and pr
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Document Figure 4 A ribbon diagram
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Document Figure 5 Some compounds wh
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Document Page 514 sis. Large number
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Document 30. O'Shea EK, Rutkowski R
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Document Acknowledgments Page 620 I
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Document Med Biol 1991; 306:9-21; (
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Document Page 629 ML, Clare M, Decr
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Document factors, 247 Combination t
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Document Cyclotheonamide A (CtA), 2
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Document D ddI, 152 tumour necrosis
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Document antistasin peptides, 281 c
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Document fragment-based programs, 5
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Document [Human immunodeficiency vi
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Document overview, 103-104, 108-109
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Document [Inhibitors] 2-((3,4-dihyd
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Document antagonistic activity, 416
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Document Kininogen, 119 high molecu
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Document Matrix-metalloproteinase (
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Document RT inhibitor, 41, 56 Nonpe
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Document Phosphoglycerate kinase (P
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Document [Protease targets] serinyl
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