Animal Waste, Water Quality and Human Health

356Animal Waste, Water Quality and Human HealthRose, J. (2004). Waterborne pathogens and indicators: a pathway forward. Proceedings ofthe 2004 National Beaches Conference, http://www.epa.gov/ost/beaches/meetings/2004/Roper, B., Kershner, J., Archer, E., Henderson, R., & Bouwes, N. (2002). An evaluation ofphysical stream habitat attributes used to monitor streams. J. Amer. Wat. Res. Assoc., 38(6):1637–1646.Rosgen, D. (1996). Applied river morphology. Pagosa Springs, Colorado, USA, WildlandHydrology.Rosgen, D. (2001). A Stream Channel Stability Assessment Methodology. Proceedings ofthe Seventh Federal Interagency Sedimentation Conference, March 25–29, 2001,Reno, NV, US. 2:II-9–15.Ruecker, N., Braithwaite, S., Topp, E., Edge, T., Lapen, D., Wilkes, G., Robertson, W.,Medeiros, D., Sensen, C., & Neumann, N. (2007). Tracking host sources ofCryptosporidium spp. in raw water for improved health risk assessment. Appl.Environ. Microbiol., 73, 3945–3957.Santo Domingo, J., & Sadowsky, M. (2007). Microbial source tracking. American Societyfor Microbiology, Washington, D.C.Santo Domingo, J., Bambic, B., Edge, T., & Wuertz, S. (2007). Quo vadis source tracking?Towards a strategic framework for environmental monitoring of faecal pollution. Wat.Res., 41(16), 3539–3552.Savitcheva, O., & Okabe, S. (2006). Alternative indicators of faecal pollution: Relations withpathogens and conventional indicators, current methodologies for direct pathogenmonitoring and future application perspectives. Wat. Res., 40(13), 2463–2476.Scott, T. (2002). Use of DNA fingerprinting and novel molecular methods to identifysources of Escherichia coli in the environment. PhD Dissertation. University ofFlorida, Gainesville.Scott, T., Rose, J., Jenkins, T., Farrah, S., & Lukasik, J. (2002). Microbial source tracking:current methodology and future directions. Appl. Environ. Microbiol., 68(12),5796–5803.Sears, C. (2005). A dynamic partnership: celebrating our gut flora. Anaerobe, 11(5), 247–251.Sghir, A., Gramer, G., Suau, A., Rochet, V., Pochart, P., & Dore, J. (2000). Quantification ofbacterial groups within human faecal flora by oligonucleotide probe hybridization.Appl. Environ. Microbiol., 66(5), 2263–2266.Shanks, O., Nietch, C., Simonich, M., Younger, M., Reynolds, D., & Field, K. (2006).Basin-wide analysis of the dynamics of faecal contamination and faecal sourceidentification in Tillamook Bay, Oregon. Appl. Environ. Microbiol., 72, 5537–5546.Shanks, O., White, K., Kelty, C., Hayes, S., Sivaganesan, M., Jenkins, M., Varma, M., &Haugland, R. (2010). Performance assessment PCR-based assays targetingBacteroidales genetic markers of cattle faecal pollution. Appl. Environ. Microbiol.,76, 1359–1366.Shively, D., Pawlik, H., Nevers, M., & Byappanahalli, M. (2003). Occurrence ofEscherichia coli in Cladophora (Chlorophyta) in nearshore water and beach sand ofLake Michigan. Appl. Environ. Microbiol., 69(8), 4714–4719.