MicroStation System, MicroLog Version 4.2 - DTU Systems Biology ...

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*Indicates species that require a MicroStation Reader for identification. Appendix 4: Database Species Lists and Their Characteristics Species Name Type Test Thio Medium Atm Temp 136 Clostridium sporosphaeroides AN GP-ROD N/A N BUA ANA 35-37 137 Clostridium sticklandii AN GP-ROD N/A N BUA ANA 35-37 138 Clostridium subterminale AN GP-ROD N/A N BUA ANA 35-37 139 Clostridium symbiosum AN GP-ROD N/A N BUA ANA 35-37 140 Clostridium tertium AN GP-ROD N/A N BUA ANA 35-37 141 Clostridium tetani AN GP-ROD N/A N BUA ANA 35-37 142 Clostridium tetanomorphum AN GP-ROD N/A N BUA ANA 35-37 143 Clostridium tyrobutyricum AN GP-ROD N/A N BUA ANA 35-37 144 Clostridium/Eubacterium species AN GP-ROD N/A N BUA ANA 35-37 145 Collinsella aerofaciens AN GP-ROD N/A N BUA ANA 35-37 146 Coprococcus catus AN GP-COCCUS N/A N BUA ANA 35-37 147 Dendrosporobacter quercicolus AN GP-ROD N/A N BUA ANA 35-37 148 Desulfobulbus elongatus AN GN-ROD N/A N BUA ANA 35-37 149 Desulfomonas pigra AN GN-ROD N/A N BUA ANA 35-37 150 Desulfomonile tiedjei AN GN-ROD N/A N BUA ANA 35-37 151 Desulfovibrio desulfuricans ss desulfuricans AN GN-ROD N/A N BUA ANA 35-37 152 Desulfovibrio fructosivorans AN GN-ROD N/A N BUA ANA 35-37 153 Desulfovibrio vulgaris ss vulgaris AN GN-ROD N/A N BUA ANA 35-37 154 Eggerthella lenta* AN GP-ROD N/A N BUA ANA 35-37 155 Eikenella corrodens* AN GN-ROD N/A N BUA ANA 35-37 156 Eubacterium angustum AN GP-ROD N/A N BUA ANA 35-37 157 Eubacterium barkeri AN GP-ROD N/A N BUA ANA 35-37 158 Eubacterium biforme AN GP-ROD N/A N BUA ANA 35-37 159 Eubacterium brachy AN GP-ROD N/A N BUA ANA 35-37 160 Eubacterium budayi AN GP-ROD N/A N BUA ANA 35-37 161 Eubacterium combesii AN GP-ROD N/A N BUA ANA 35-37 162 Eubacterium contortum AN GP-ROD N/A N BUA ANA 35-37 163 Eubacterium cylindroides AN GP-ROD N/A N BUA ANA 35-37 164 Eubacterium desmolans AN GP-ROD N/A N BUA ANA 35-37 165 Eubacterium dolichum AN GP-ROD N/A N BUA ANA 35-37 166 Eubacterium fissicatena AN GP-ROD N/A N BUA ANA 35-37 167 Eubacterium hallii AN GP-ROD N/A N BUA ANA 35-37 168 Eubacterium limosum BGA AN GP-ROD N/A N BUA ANA 35-37 169 Eubacterium limosum BGB AN GP-ROD N/A N BUA ANA 35-37 170 Eubacterium moniliforme AN GP-ROD N/A N BUA ANA 35-37 171 Eubacterium multiforme AN GP-ROD N/A N BUA ANA 35-37 172 Eubacterium nodatum AN GP-ROD N/A N BUA ANA 35-37 173 Eubacterium plautii AN GP-ROD N/A N BUA ANA 35-37 174 Eubacterium saburreum AN GP-ROD N/A N BUA ANA 35-37 175 Eubacterium tortuosum AN GP-ROD N/A N BUA ANA 35-37 176 Eubacterium uniforme AN GP-ROD N/A N BUA ANA 35-37 177 Eubacterium yurii ss margaretiae AN GP-ROD N/A N BUA ANA 35-37 178 Eubacterium yurii ss schtitka AN GP-ROD N/A N BUA ANA 35-37 179 Eubacterium yurii ss yurii AN GP-ROD N/A N BUA ANA 35-37 180 Facklamia hominis AN GP-COCCUS N/A N BUA ANA 35-37 181 Facklamia sourekii AN GP-COCCUS N/A N BUA ANA 35-37 182 Falcivibrio grandis AN GP-ROD N/A N BUA ANA 35-37 183 Falcivibrio vaginalis AN GP-ROD N/A N BUA ANA 35-37 184 Filifactor alocis* AN GN-ROD N/A N BUA ANA 35-37 185 Filifactor villosus AN GP-ROD N/A N BUA ANA 35-37 186 Finegoldia magna AN GP-COCCUS N/A N BUA ANA 35-37 187 Fusobacterium gonidiaformans* AN GN-ROD N/A N BUA ANA 35-37 188 Fusobacterium naviforme* AN GN-ROD N/A N BUA ANA 35-37 189 Fusobacterium necrogenes* AN GN-ROD N/A N BUA ANA 35-37 190 Fusobacterium necrophorum* AN GN-ROD N/A N BUA ANA 35-37 191 Fusobacterium nucleatum ss animalis* AN GN-ROD N/A N BUA ANA 35-37 192 Fusobacterium nucleatum ss fusiforme* AN GN-ROD N/A N BUA ANA 35-37 193 Fusobacterium nucleatum ss nucleatum* AN GN-ROD N/A N BUA ANA 35-37 194 Fusobacterium nucleatum ss polymorphum* AN GN-ROD N/A N BUA ANA 35-37 195 Fusobacterium nucleatum ss vincentii* AN GN-ROD N/A N BUA ANA 35-37 196 Fusobacterium russii* AN GN-ROD N/A N BUA ANA 35-37 197 Fusobacterium simiae* AN GN-ROD N/A N BUA ANA 35-37 198 Fusobacterium ulcerans* AN GN-ROD N/A N BUA ANA 35-37 199 Fusobacterium varium* AN GN-ROD N/A N BUA ANA 35-37 200 Gardnerella vaginalis AN GP-ROD N/A N BUA ANA 35-37 201 Gemella bergeri AN GP-COCCUS N/A N BUA ANA 35-37 202 Gemella haemolysans AN GP-COCCUS N/A N BUA ANA 35-37 203 Gemella morbillorum AN GP-COCCUS N/A N BUA ANA 35-37 204 Granulicatella adiacens AN GP-COCCUS N/A N BUA ANA 35-37 MicroStation System/MicroLog User Guide Apr 07 Section 13 � Page- 21 -
Appendix 4: Database Species Lists and Their Characteristics Species Name Type Test Thio Medium Atm Temp 205 Hallella seregens AN GN-ROD N/A N BUA ANA 35-37 206 Lactobacillus acetotolerans AN GP-ROD N/A N BUA ANA 35-37 207 Lactobacillus acidophilus BGA AN GP-ROD N/A N BUA ANA 35-37 208 Lactobacillus acidophilus BGB AN GP-ROD N/A N BUA ANA 35-37 209 Lactobacillus alimentarius AN GP-ROD N/A N BUA ANA 35-37 210 Lactobacillus amylovorus AN GP-ROD N/A N BUA ANA 35-37 211 Lactobacillus aviarius ss araffinosus AN GP-ROD N/A N BUA ANA 35-37 212 Lactobacillus aviarius ss aviarius AN GP-ROD N/A N BUA ANA 35-37 213 Lactobacillus bifermentans AN GP-ROD N/A N BUA ANA 35-37 214 Lactobacillus brevis AN GP-ROD N/A N BUA ANA 35-37 215 Lactobacillus buchneri AN GP-ROD N/A N BUA ANA 35-37 216 Lactobacillus casei AN GP-ROD N/A N BUA ANA 35-37 217 Lactobacillus catenaformis AN GP-ROD N/A N BUA ANA 35-37 218 Lactobacillus collinoides AN GP-ROD N/A N BUA ANA 26 219 Lactobacillus coryniformis ss coryniformis AN GP-ROD N/A N BUA ANA 35-37 220 Lactobacillus coryniformis ss torquens AN GP-ROD N/A N BUA ANA 35-37 221 Lactobacillus crispatus AN GP-ROD N/A N BUA ANA 35-37 222 Lactobacillus curvatus AN GP-ROD N/A N BUA ANA 35-37 223 Lactobacillus delbrueckii ss bulgaricus AN GP-ROD N/A N BUA ANA 35-37 224 Lactobacillus delbrueckii ss delbrueckii AN GP-ROD N/A N BUA ANA 35-37 225 Lactobacillus delbrueckii ss lactis AN GP-ROD N/A N BUA ANA 35-37 226 Lactobacillus farciminis AN GP-ROD N/A N BUA ANA 35-37 227 Lactobacillus fermentum AN GP-ROD N/A N BUA ANA 35-37 228 Lactobacillus fructivorans AN GP-ROD N/A N BUA ANA 35-37 229 Lactobacillus fructosus AN GP-ROD N/A N BUA ANA 35-37 230 Lactobacillus gasseri AN GP-ROD N/A N BUA ANA 35-37 231 Lactobacillus hamsteri AN GP-ROD N/A N BUA ANA 35-37 232 Lactobacillus helveticus AN GP-ROD N/A N BUA ANA 35-37 233 Lactobacillus hilgardii AN GP-ROD N/A N BUA ANA 26 234 Lactobacillus jensenii AN GP-ROD N/A N BUA ANA 35-37 235 Lactobacillus kefiri AN GP-ROD N/A N BUA ANA 35-37 236 Lactobacillus malefermentans AN GP-ROD N/A N BUA ANA 30 237 Lactobacillus mali/sakei ss sakei AN GP-ROD N/A N BUA ANA 35-37 238 Lactobacillus murinus/paracasei ss tolerans AN GP-ROD N/A N BUA ANA 35-37 239 Lactobacillus oris/parabuchneri AN GP-ROD N/A N BUA ANA 35-37 240 Lactobacillus paracasei ss paracasei AN GP-ROD N/A N BUA ANA 35-37 241 Lactobacillus pentosus AN GP-ROD N/A N BUA ANA 35-37 242 Lactobacillus plantarum AN GP-ROD N/A N BUA ANA 35-37 243 Lactobacillus reuteri AN GP-ROD N/A N BUA ANA 35-37 244 Lactobacillus rhamnosus AN GP-ROD N/A N BUA ANA 35-37 245 Lactobacillus salivarius ss salicinius AN GP-ROD N/A N BUA ANA 35-37 246 Lactobacillus salivarius ss salivarius AN GP-ROD N/A N BUA ANA 35-37 247 Lactobacillus sanfranciscensis AN GP-ROD N/A N BUA ANA 35-37 248 Lactobacillus suebicus AN GP-ROD N/A N BUA ANA 35-37 249 Lactobacillus vaginalis AN GP-ROD N/A N BUA ANA 35-37 250 Lactococcus garvieae AN GP-COCCUS N/A N BUA ANA 35-37 251 Lactococcus lactis ss cremoris AN GP-COCCUS N/A N BUA ANA 35-37 252 Lactococcus lactis ss hordniae AN GP-COCCUS N/A N BUA ANA 35-37 253 Lactococcus lactis ss lactis AN GP-COCCUS N/A N BUA ANA 35-37 254 Lactococcus plantarum AN GP-COCCUS N/A N BUA ANA 35-37 255 Lactococcus raffinolactis AN GP-COCCUS N/A N BUA ANA 35-37 256 Leuconostoc carnosum AN GP-COCCUS N/A N BUA ANA 35-37 257 Leuconostoc citreum AN GP-COCCUS N/A N BUA ANA 35-37 258 Leuconostoc fallax AN GP-COCCUS N/A N BUA ANA 35-37 259 Leuconostoc gelidum AN GP-COCCUS N/A N BUA ANA 26 260 Leuconostoc lactis AN GP-COCCUS N/A N BUA ANA 35-37 261 Leuconostoc mesenteroides ss cremoris AN GP-COCCUS N/A N BUA ANA 35-37 262 Leuconostoc mesenteroides ss dextranicum AN GP-COCCUS N/A N BUA ANA 35-37 263 Leuconostoc mesenteroides ss mesenteroides AN GP-COCCUS N/A N BUA ANA 35-37 264 Megamonas hypermegale AN GN-ROD N/A N BUA ANA 35-37 265 Megasphaera cerevisiae AN GN-COCCUS N/A N BUA ANA 35-37 266 Megasphaera elsdenii AN GN-COCCUS N/A N BUA ANA 35-37 267 Micromonas micros AN GP-COCCUS N/A N BUA ANA 35-37 268 Mobiluncus curtisii AN GP-ROD N/A N BUA ANA 35-37 269 Mobiluncus mulieris AN GP-ROD N/A N BUA ANA 35-37 270 Mongibacterium timidum AN GP-ROD N/A N BUA ANA 35-37 271 Pectinatus cerevisiiphilus AN GN-ROD N/A N BUA ANA 30 272 Pectinatus frisingensis AN GN-ROD N/A N BUA ANA 30 273 Pediococcus acidilactici AN GP-COCCUS N/A N BUA ANA 35-37 *Indicates species that require a MicroStation Reader for identification. Section 13 � Page - 22 - MicroStation System/MicroLog User Guide Apr 07
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MicroStation System MicroLog Versi
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LICENSE AGREEMENT Notice: This is a
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Table of Contents Section Title 1.
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10. Frequently Asked Questions…
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Welcome Section 1 � Page 2 Connec
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2. Installation and Registration In
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Installation and Registration The A
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8. E-mail the User Key File to tech
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MicroStation System/MicroLog Overvi
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Follow directions closely to obtain
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Preparing Samples Preparing an inoc
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Preparing Samples Recognizing fasti
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Preparing Samples Media shorthand:
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Preparing Samples Don’t forget to
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Preparing Samples b. Use a sterile
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Preparing Samples aids in liquefyin
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Preparing Samples Caution! Pipet th
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Preparing Samples Special Procedure
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Preparing Samples Initial culture m
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Reading MicroPlates Set Up tab Sele
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Reading MicroPlates When you’re e
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Reading MicroPlates 2. Enter reacti
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Reading MicroPlates Entering sample
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Reading MicroPlates Select file nam
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Reading MicroPlates Naming Workshee
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Reading MicroPlates This arrow show
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Reading MicroPlates Using Worksheet
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Reading MicroPlates 4. Click Save t
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Reading MicroPlates Wells with high
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Reading MicroPlates Exiting When yo
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Interpreting Results Understanding
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Interpreting Results Mismatch Type
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Interpreting Results What are those
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Interpreting Results NOTE: A1 value
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Interpreting Results Slide the scro
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Interpreting Results VS. CURRENT MI
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Interpreting Results “Other” fi
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Data Management and Compiling Datab
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Combining Data Files Data Managemen
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OK, Out, Hold, Atypical Sorting lab
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Remember! When building your own da
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DATABASE WINDOW Data Management and
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Arrow indicates selected entry Data
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Export Help Mark this choice if you
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Page 109 and 110: 8. Administration and Security In t
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Page 117 and 118: 9. Technical Notes In this section:
Page 119 and 120: Making Biolog Universal Growth Agar
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Page 127 and 128: Troubleshooting Symptom Cause Solut
Page 129 and 130: Troubleshooting Preparing Inocula S
Page 131 and 132: Troubleshooting MicroStation Reader
Page 133 and 134: Glossary Dendrogram Cluster diagram
Page 135 and 136: Glossary Spore, fungal Sterile, fun
Page 137 and 138: Culture Media Atmosphere Temperatur
Page 139 and 140: Appendices: Notes Notes: Section 13
Page 141 and 142: Appendix 4: Database Species Lists
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Page 175 and 176: Appendix 5: Program Printouts Appen
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Page 181 and 182: Appendix 5: Program Printouts Print
Page 187 and 188: Appendix 6: Dangerous Pathogens (DP
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