MicroStation System, MicroLog Version 4.2 - DTU Systems Biology ...

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*Indicates species that require a MicroStation Reader for identification. Appendix 4: Database Species Lists and Their Characteristics Species Name Type Test Thio Medium Atm Temp 274 Pediococcus dextrinicus AN GP-COCCUS N/A N BUA ANA 35-37 275 Pediococcus parvulus AN GP-COCCUS N/A N BUA ANA 35-37 276 Pediococcus pentosaceus AN GP-COCCUS N/A N BUA ANA 35-37 277 Pediococcus urinaeequi AN GP-COCCUS N/A N BUA ANA 35-37 278 Peptostreptococcus anaerobius AN GP-COCCUS N/A N BUA ANA 35-37 279 Peptostreptococcus asaccharolyticus AN GP-COCCUS N/A N BUA ANA 35-37 280 Peptostreptococcus barnesae AN GP-COCCUS N/A N BUA ANA 35-37 281 Peptostreptococcus hydrogenalis AN GP-COCCUS N/A N BUA ANA 35-37 282 Peptostreptococcus indolicus AN GP-COCCUS N/A N BUA ANA 35-37 283 Peptostreptococcus lacrimalis AN GP-COCCUS N/A N BUA ANA 35-37 284 Peptostreptococcus lactolyticus AN GP-COCCUS N/A N BUA ANA 35-37 285 Peptostreptococcus prevotii AN GP-COCCUS N/A N BUA ANA 35-37 286 Peptostreptococcus tetradius AN GP-COCCUS N/A N BUA ANA 35-37 287 Peptostreptococcus vaginalis AN GP-COCCUS N/A N BUA ANA 35-37 288 Porphyromonas asaccharolytica AN GN-ROD N/A N BUA ANA 35-37 289 Porphyromonas circumdentaria/endodontalis AN GN-ROD N/A N BUA ANA 35-37 290 Porphyromonas gingivalis AN GN-ROD N/A N BUA ANA 35-37 291 Porphyromonas levii AN GN-ROD N/A N BUA ANA 35-37 292 Porphyromonas macacae AN GN-ROD N/A N BUA ANA 35-37 293 Prevotella bivia AN GN-ROD N/A N BUA ANA 35-37 294 Prevotella buccae AN GN-ROD N/A N BUA ANA 35-37 295 Prevotella buccalis AN GN-ROD N/A N BUA ANA 35-37 296 Prevotella corporis AN GN-ROD N/A N BUA ANA 35-37 297 Prevotella denticola AN GN-ROD N/A N BUA ANA 35-37 298 Prevotella disiens (GNR Kan-R setup) AN GN-ROD N/A N BUA ANA 35-37 299 Prevotella disiens (Standard AN setup) AN GN-ROD N/A N BUA ANA 35-37 300 Prevotella heparinolytica AN GN-ROD N/A N BUA ANA 35-37 301 Prevotella intermedia AN GN-ROD N/A N BUA ANA 35-37 302 Prevotella loescheii AN GN-ROD N/A N BUA ANA 35-37 303 Prevotella nigrescens AN GN-ROD N/A N BUA ANA 35-37 304 Prevotella oralis AN GN-ROD N/A N BUA ANA 35-37 305 Prevotella oris (GNR Kan-R setup) AN GN-ROD N/A N BUA ANA 35-37 306 Prevotella oulora AN GN-ROD N/A N BUA ANA 35-37 307 Prevotella species AN GN-ROD N/A N BUA ANA 35-37 308 Propionibacterium acidipropionici* AN GP-ROD N/A N BUA ANA 35-37 309 Propionibacterium acnes* AN GP-ROD N/A N BUA ANA 35-37 310 Propionibacterium avidum* AN GP-ROD N/A N BUA ANA 35-37 311 Propionibacterium freudenreichii ss freudenreichii* AN GP-ROD N/A N BUA ANA 35-37 312 Propionibacterium granulosum* AN GP-ROD N/A N BUA ANA 35-37 313 Propionibacterium jensenii* AN GP-ROD N/A N BUA ANA 35-37 314 Propionibacterium lymphophilum* AN GP-ROD N/A N BUA ANA 35-37 315 Propionibacterium propionicus* AN GP-ROD N/A N BUA ANA 35-37 316 Propionibacterium thoenii* AN GP-ROD N/A N BUA ANA 35-37 317 Pseudoramibacter alactolyticus AN GP-ROD N/A N BUA ANA 35-37 318 Rikenella microfusus AN GN-ROD N/A N BUA ANA 35-37 319 Ruminococcus gnavus AN GP-COCCUS N/A N BUA ANA 35-37 320 Ruminococcus hansenii AN GP-COCCUS N/A N BUA ANA 35-37 321 Ruminococcus lactaris AN GP-COCCUS N/A N BUA ANA 35-37 322 Ruminococcus productus AN GP-COCCUS N/A N BUA ANA 35-37 323 Ruminococcus torques AN GP-COCCUS N/A N BUA ANA 35-37 324 Sarcina maxima AN GP-COCCUS N/A N BUA ANA 35-37 325 Sarcina ventriculi AN GP-COCCUS N/A N BUA ANA 35-37 326 Sebaldella termitidis AN GN-ROD N/A N BUA ANA 35-37 327 Selenomonas flueggei AN GN-ROD N/A N BUA ANA 35-37 328 Selenomonas infelix AN GN-ROD N/A N BUA ANA 35-37 329 Selenomonas noxia AN GN-ROD N/A N BUA ANA 35-37 330 Selenomonas sputigena AN GN-ROD N/A N BUA ANA 35-37 331 Slackia heliotrinireducens AN GP-COCCUS N/A N BUA ANA 35-37 332 Sporolactobacillus inulinus AN GP-ROD N/A N BUA ANA 35-37 333 Sporomusa acidovorans AN GN-ROD N/A N BUA ANA 35-37 334 Sporomusa ovata AN GN-ROD N/A N BUA ANA 35-37 335 Sporomusa sphaeroides AN GN-ROD N/A N BUA ANA 35-37 336 Staphylococcus aureus ss anaerobius AN GP-COCCUS N/A N BUA ANA 35-37 337 Staphylococcus saccharolyticus AN GP-COCCUS N/A N BUA ANA 35-37 338 Streptococcus alactolyticus AN GP-COCCUS N/A N BUA ANA 35-37 339 Streptococcus anginosus AN GP-COCCUS N/A N BUA ANA 35-37 340 Streptococcus bovis AN GP-COCCUS N/A N BUA ANA 35-37 341 Streptococcus macacae AN GP-COCCUS N/A N BUA ANA 35-37 342 Streptococcus mutans AN GP-COCCUS N/A N BUA ANA 35-37 MicroStation System/MicroLog User Guide Apr 07 Section 13 � Page- 23 -
Appendix 4: Database Species Lists and Their Characteristics Species Name Type Test Thio Medium Atm Temp 343 Streptococcus pleomorphus AN GP-COCCUS N/A N BUA ANA 35-37 344 Streptococcus suis AN GP-COCCUS N/A N BUA ANA 35-37 345 Streptococcus thermophilus AN GP-COCCUS N/A N BUA ANA 35-37 346 Succinivibrio dextrinosolvens AN GN-ROD N/A N BUA ANA 35-37 347 Sutterella wadsworthensis AN GN-ROD N/A N BUA ANA 35-37 348 Tetragenococcus halophilus AN GP-COCCUS N/A N BUA ANA 30 349 Tissierella praeacuta AN GN-ROD N/A N BUA ANA 35-37 350 Veillonella atypica/caviae/dispar/parvula AN GN-COCCUS N/A N BUA ANA 35-37 351 Veillonella criceti AN GN-COCCUS N/A N BUA ANA 35-37 352 Veillonella ratti AN GN-COCCUS N/A N BUA ANA 35-37 353 Weissella confusa AN GP-COCCUS N/A N BUA ANA 35-37 354 Weissella halotolerans/hellenica AN GP-ROD N/A N BUA ANA 35-37 355 Weissella kandleri AN GP-ROD N/A N BUA ANA 35-37 356 Weissella minor AN GP-ROD N/A N BUA ANA 35-37 357 Weissella paramesenteroides AN GP-COCCUS N/A N BUA ANA 35-37 358 Weissella viridescens AN GP-ROD N/A N BUA ANA 35-37 359 Wolinella succinogenes AN GN-ROD N/A N BUA ANA 35-37 360 Zymomonas mobilis ss mobilis* AN GN-ROD N/A N BUA ANA 30 361 Zymophilus paucivorans/raffinosivorans AN GN-ROD N/A N BUA ANA 30 *Indicates species that require a MicroStation Reader for identification. Section 13 � Page - 24 - MicroStation System/MicroLog User Guide Apr 07
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MicroStation System MicroLog Versi
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LICENSE AGREEMENT Notice: This is a
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Table of Contents Section Title 1.
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10. Frequently Asked Questions…
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Welcome Section 1 � Page 2 Connec
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2. Installation and Registration In
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Installation and Registration The A
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8. E-mail the User Key File to tech
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MicroStation System/MicroLog Overvi
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Follow directions closely to obtain
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Preparing Samples Preparing an inoc
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Preparing Samples Recognizing fasti
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Preparing Samples Media shorthand:
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Preparing Samples Don’t forget to
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Preparing Samples b. Use a sterile
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Preparing Samples aids in liquefyin
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Preparing Samples Caution! Pipet th
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Preparing Samples Special Procedure
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Preparing Samples Initial culture m
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Reading MicroPlates Set Up tab Sele
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Reading MicroPlates When you’re e
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Reading MicroPlates 2. Enter reacti
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Reading MicroPlates Entering sample
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Reading MicroPlates Select file nam
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Reading MicroPlates Naming Workshee
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Reading MicroPlates This arrow show
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Reading MicroPlates Using Worksheet
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Reading MicroPlates 4. Click Save t
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Reading MicroPlates Wells with high
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Reading MicroPlates Exiting When yo
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Interpreting Results Understanding
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Interpreting Results Mismatch Type
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Interpreting Results What are those
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Interpreting Results NOTE: A1 value
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Interpreting Results Slide the scro
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Interpreting Results VS. CURRENT MI
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Interpreting Results “Other” fi
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Data Management and Compiling Datab
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Combining Data Files Data Managemen
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OK, Out, Hold, Atypical Sorting lab
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Remember! When building your own da
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DATABASE WINDOW Data Management and
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Arrow indicates selected entry Data
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Export Help Mark this choice if you
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Page 133 and 134: Glossary Dendrogram Cluster diagram
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Page 139 and 140: Appendices: Notes Notes: Section 13
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