MicroStation System, MicroLog Version 4.2 - DTU Systems Biology ...

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MicroStation System/MicroLog Overview For YT and FF databases, MicroStation/MicroLog uses the developed pattern matching method called Endpoint ID (EID). This method more accurately identifies species patterns by considering the daily endpoint determinations. For the YT MicroPlate, turbidity may be caused by either growth or color formation. For the FF MicroPlate, both growth (measured by turbidity) and color formation are measured independently for each well. Identifying Microbes and Managing Data The software is structured to move you easily through identifying microbes and managing data. Navigation tools include a menu bar at the top of the window, menu tabs to move from window to window, dropdown lists to choose from pre-set choices, selection bars to reach detailed setup windows, and fields to type in specific data. Menu bar Menu tabs Selection button SET UP WINDOW (SHOWING NAVIGATION TOOLS) The software will guide you in answering the following questions: • Do I plan to read MicroPlates visually? • Will I use the reader or will I read back from a file? • Do I want an automatic printout of results? • Do I want to select a specific printer? Drop-down lists Section 3 � Page 6 MicroStation System/MicroLog User Guide Nov 07
MicroStation System/MicroLog Overview If you plan to enter MicroPlate reactions manually you’ll enter sample identifiers using the mouse, keyboard, or on-screen methods to indicate positive, negative, or borderline MicroPlate reactions. ENTERING SAMPLE IDENTIFIERS AND MICROPLATE REACTIONS In addition, the software allows you to: • Use worksheets • Save data • Edit files and build databases • Adjust thresholds • View a database • Perform cluster analysis MicroStation System/MicroLog User Guide Nov 07 Section 3 � Page 7
Page 1 and 2: MicroStation System MicroLog Versi
Page 3 and 4: LICENSE AGREEMENT Notice: This is a
Page 5 and 6: Table of Contents Section Title 1.
Page 7 and 8: 10. Frequently Asked Questions…
Page 9 and 10: Welcome Section 1 � Page 2 Connec
Page 11 and 12: 2. Installation and Registration In
Page 13 and 14: Installation and Registration The A
Page 15 and 16: 8. E-mail the User Key File to tech
Page 17 and 18: MicroStation System/MicroLog Overvi
Page 19 and 20: Follow directions closely to obtain
Page 21: MicroStation System/MicroLog Overvi
Page 29 and 30: Preparing Samples Preparing an inoc
Page 31 and 32: Preparing Samples Recognizing fasti
Page 33 and 34: Preparing Samples Media shorthand:
Page 35 and 36: Preparing Samples Don’t forget to
Page 37 and 38: Preparing Samples b. Use a sterile
Page 39 and 40: Preparing Samples aids in liquefyin
Page 41 and 42: Preparing Samples Caution! Pipet th
Page 43 and 44: Preparing Samples Special Procedure
Page 45 and 46: Preparing Samples Initial culture m
Page 47 and 48: Reading MicroPlates Set Up tab Sele
Page 49 and 50: Reading MicroPlates When you’re e
Page 51 and 52: Reading MicroPlates 2. Enter reacti
Page 53 and 54: Reading MicroPlates Entering sample
Page 55 and 56: Reading MicroPlates Select file nam
Page 57 and 58: Reading MicroPlates Naming Workshee
Page 59 and 60: Reading MicroPlates This arrow show
Page 61 and 62: Reading MicroPlates Using Worksheet
Page 63 and 64: Reading MicroPlates 4. Click Save t
Page 65 and 66: Reading MicroPlates Wells with high
Page 67 and 68: Reading MicroPlates Exiting When yo
Page 69 and 70: Interpreting Results Understanding
Page 71 and 72: Interpreting Results Mismatch Type
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Interpreting Results What are those
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Interpreting Results NOTE: A1 value
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Interpreting Results Slide the scro
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Interpreting Results VS. CURRENT MI
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Interpreting Results “Other” fi
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Data Management and Compiling Datab
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Combining Data Files Data Managemen
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OK, Out, Hold, Atypical Sorting lab
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Remember! When building your own da
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DATABASE WINDOW Data Management and
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Arrow indicates selected entry Data
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Export Help Mark this choice if you
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8. Administration and Security In t
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Important! • If you test Password
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Log-In Privileges Administration an
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Remember that the password must be
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9. Technical Notes In this section:
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Making Biolog Universal Growth Agar
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� � � � Technical Notes Gen
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10. Frequently Asked Questions In t
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Q A Q A Q A Frequently Asked Questi
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Troubleshooting Symptom Cause Solut
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Troubleshooting Preparing Inocula S
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Troubleshooting MicroStation Reader
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Glossary Dendrogram Cluster diagram
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Glossary Spore, fungal Sterile, fun
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Culture Media Atmosphere Temperatur
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Appendices: Notes Notes: Section 13
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Appendix 4: Database Species Lists
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Appendix 5: Program Printouts Appen
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Appendix 5: Program Printouts 1�
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Appendix 5: Program Printouts Funga
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Appendix 5: Program Printouts Print
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Appendix 6: Dangerous Pathogens (DP
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MicroStation System, MicroLog Version 4.2 - DTU Systems Biology ...

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