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Encyclopedia of Evolution.pdf - Online Reading Center

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coevolution<br />

descent, and that scientists had been studying evolution all<br />

along without knowing it.<br />

Cladists pay close attention to the occasional differences<br />

between cladistic and traditional classification systems. One<br />

significant example <strong>of</strong> these differences is the reclassification<br />

<strong>of</strong> the flowering plants. Traditionally, all flowering plants<br />

were classified as either monocots or dicots. More recent<br />

analysis indicates that the monocots are a monophyletic<br />

group but the dicots are not. The monocots are one branch<br />

from within the dicots; therefore “dicot” is a paraphyletic<br />

group (see figure on page 76). Cladistics has shown that the<br />

monocot/dicot dichotomy that every college biology student<br />

learns is an oversimplification.<br />

Perhaps the main advantage <strong>of</strong> cladistics in evolutionary<br />

science is that it allows investigations to proceed without having<br />

detailed knowledge <strong>of</strong> which ancient species, represented<br />

today by fossils, were or were not ancestral to which modern<br />

species. For example, the existence <strong>of</strong> Homo Habilis about<br />

two million years ago is well known. However, scientists<br />

cannot know if H. habilis represented the actual ancestral<br />

population from which the modern human species evolved,<br />

or whether modern humans evolved from another population<br />

similar to H. habilis. With cladistics, research can continue<br />

despite this uncertainty.<br />

The cladistic method has received some experimental<br />

confirmation. <strong>Evolution</strong>ary microbiologist Daniel Hillis<br />

grew cultures <strong>of</strong> viruses in his laboratory, allowing them<br />

to undergo mutations and evolve into different lineages. He<br />

knew precisely what the pattern <strong>of</strong> evolutionary branching<br />

was for these viruses. He then performed cladistic analyses,<br />

using DNA base sequences. The resulting cladogram closely<br />

matched the evolutionary pattern that had actually occurred.<br />

Some creationists (see creationism) have pointed to cladistics<br />

as an example <strong>of</strong> evolutionists starting to lose faith in<br />

evolutionary science. When a cladistic approach was used in<br />

classifying organisms in the British Museum <strong>of</strong> Natural History<br />

in 1981, some creationists hailed it as the first step in<br />

the death <strong>of</strong> evolutionary assumptions, and some evolutionary<br />

scientists also worried that this was what was happening.<br />

Cladists are quite certain that all <strong>of</strong> life represents one<br />

The dicots are a paraphyletic group <strong>of</strong> flowering plants because the<br />

monocot lineage is excluded from it. The term dicot is used descriptively<br />

but is not a phylogenetic classification.<br />

immense pattern <strong>of</strong> branching from a common ancestor, just<br />

as all evolutionists since Darwin have assumed.<br />

Cladistics has also proven its worth in the study <strong>of</strong> evolutionary<br />

medicine. Cladograms regularly appear in articles<br />

published in such journals as the Journal <strong>of</strong> Emerging Infectious<br />

Diseases, published by the National Institutes <strong>of</strong> Health.<br />

Epidemiologists routinely perform cladistic analyses on strains<br />

<strong>of</strong> diseases, in order to determine which strains are most<br />

closely related to which others, in the hope <strong>of</strong> deducing where<br />

new strains <strong>of</strong> diseases originated. This knowledge helps in the<br />

production <strong>of</strong> vaccines, to control the spread <strong>of</strong> the disease,<br />

and to predict the emergence <strong>of</strong> new diseases. It was cladistic<br />

analysis that allowed epidemiologists to identify that the strain<br />

<strong>of</strong> anthrax that was used in bioterrorist attacks in the United<br />

States in 2001 came from within the United States. Cladistics<br />

has also revealed the origin <strong>of</strong> HIV (see AIDS, evolution<br />

<strong>of</strong>). Cladistics has proven not only a revolutionary technique<br />

within evolutionary science but has allowed evolutionary science<br />

to produce practical benefits to humankind.<br />

Further <strong>Reading</strong><br />

Baum, David A., et al. “The tree-thinking challenge.” Science 310<br />

(2005): 979–980.<br />

Cracraft, Joel, and Michael J. Donoghue. Assembling the Tree <strong>of</strong><br />

Life. New York: Oxford University Press, 2004.<br />

Foer, Joshua. “Pushing PhyloCode.” Discover, April 2005, 46–51.<br />

Freeman, Scott, and Jon C. Herron. “Reconstructing evolutionary<br />

trees.” Chap. 14 in <strong>Evolution</strong>ary Analysis, 3rd ed. Upper Saddle<br />

River, N.J.: Pearson Prentice Hall, 2004.<br />

Hillis, Daniel M., et al. “Experimental phylogenies: Generation <strong>of</strong> a<br />

known phylogeny.” Science 255 (1992): 589–592.<br />

Nikaido, M., A. P. Rooney, and N. Okada. “Phylogenetic relationships<br />

among cetartiodactyls based on insertions <strong>of</strong> short and long<br />

interspersed elements: Hippopotamuses are the closest extant<br />

relatives <strong>of</strong> whales.” Proceedings <strong>of</strong> the National Academy <strong>of</strong> Sciences<br />

USA 96 (1999): 10,261–10,266.<br />

Stanford, Alice M., Rachel Harden, and Clifford R. Parks. “Phylogeny<br />

and biogeography <strong>of</strong> Juglans (Juglandaceae) based on matK and ITS<br />

sequence data.” American Journal <strong>of</strong> Botany 87 (2000): 872–882.<br />

Stewart, Caro-Beth. “The powers and pitfalls <strong>of</strong> parsimony.” Nature<br />

361 (1993): 603–607.<br />

coevolution Coevolution occurs when the evolution <strong>of</strong><br />

one species influences, and is influenced by, the evolution<br />

<strong>of</strong> another species. Probably every species has experienced<br />

coevolution, since every species exists in a web <strong>of</strong> ecological<br />

relationships. In the general sense, every species coevolves<br />

with every other species. In the specific sense, the term coevolution<br />

is usually restricted to important and specific relationships<br />

between species that influence the evolution <strong>of</strong> each <strong>of</strong><br />

them, rather than the diffuse background <strong>of</strong> ecological relationships.<br />

For example, many plants have evolved the ability<br />

to compensate for the loss <strong>of</strong> tissue to herbivores, and<br />

herbivores have evolved the ability to digest plants, but this<br />

interaction is usually considered too diffuse to qualify as<br />

coevolution. Coevolution occurred when plants evolved the<br />

ability to produce toxins, and herbivores evolved the ability

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