Alberto Risueño Pérez - Gredos - Universidad de Salamanca

Tesis Doctoral
Roth, R.B., Hevezi, P., Lee, J., Willhite, D., Lechner, S.M., Foster, A.C., and Zlotnik, A. (2006).
Gene expression analyses reveal molecular relationships among 20 regions of the human
CNS. Neurogenetics 7, 67-­‐80.
Rozman, C., and Montserrat, E. (1995). Chronic lymphocytic leukemia. N Engl J Med 333,
1052-­‐1057.
Scheffe, H. (1959). The Analysis of Variance (pp. xvi. 477. John Wiley & Sons: New York;
Chapman & Hall: London).
Schwender, H. (2012). siggenes: Multiple testing using SAM and Efron's empirical Bayes
approaches.
Shai, O., Morris, Q.D., Blencowe, B.J., and Frey, B.J. (2006). Inferring global levels of
alternative splicing isoforms using a generative model of microarray data. Bioinformatics 22,
606-­‐613.
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski,
B., and Ideker, T. (2003). Cytoscape: a software environment for integrated models of
biomolecular interaction networks. Genome Res 13, 2498-­‐2504.
Shen, S., Warzecha, C.C., Carstens, R.P., and Xing, Y. (2010). MADS+: discovery of differential
splicing events from Affymetrix exon junction array data. Bioinformatics 26, 268-­‐269.
Sigrist, C.J., Cerutti, L., de Castro, E., Langendijk-­‐Genevaux, P.S., Bulliard, V., Bairoch, A., and
Hulo, N. (2010). PROSITE, a protein domain database for functional characterization and
annotation. Nucleic Acids Res 38, D161-­‐166.
Sing, T., Sander, O., Beerenwinkel, N., and Lengauer, T. (2005). ROCR: visualizing classifier
performance in R. Bioinformatics 21, 3940-­‐3941.
Smith, C.W., and Valcarcel, J. (2000). Alternative pre-­‐mRNA splicing: the logic of
combinatorial control. Trends Biochem Sci 25, 381-­‐388.
Smoot, M.E., Ono, K., Ruscheinski, J., Wang, P.-­‐L., and Ideker, T. (2011). Cytoscape 2.8: new
features for data integration and network visualization. Bioinformatics 27, 431-­‐432.
Smyth, G. (2005). Bioinformatics and Computational Biology Solutions Using R and
Bioconductor, R. Gentleman, V.J. Carey, W. Huber, R.A. Irizarry, and S. Dudoit, eds. (Springer
New York), pp. 397-­‐420.
Smyth, G.K., Ritchie, M., and Thorne, N. (2012). limma: Linear Models for Microarray Data
User ’ s Guide ( Now Including RNA-­‐Seq Data Analysis ).
Spiegelman, B.M., and Heinrich, R. (2004). Biological Control through Regulated
Transcriptional Coactivators. Cell 119, 157-­‐167.
Stalteri, M.A., and Harrison, A.P. (2007). Interpretation of multiple probe sets mapping to the
same gene in Affymetrix GeneChips. BMC Bioinformatics 8, 13.
Su, A.I., Wiltshire, T., Batalov, S., Lapp, H., Ching, K.A., Block, D., Zhang, J., Soden, R., Hayakawa,
M., Kreiman, G., et al. (2004). A gene atlas of the mouse and human protein-­‐encoding
transcriptomes. Proc Natl Acad Sci U S A 101, 6062-­‐6067.
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