iCys User Guide

More documents

Recommendations

Info

iCys Cytometric Analysis Software Application Overview iCys Task Bar Refresh the contours to view the cellular segmentation in the Field View window. Continue adjusting the threshold value to achieve optimal segmentation. Contour Allows you to generate the primary (threshold) contour for events by contouring the input image. Creating or clicking on a Contour module opens the following menu. 3-54 iCys Research Imaging Cytometer User Guide Revision B
May 6, 2005 iCys Cytometric Analysis Software Application Overview ❍ Component name—Enter the name for the contour component here. This component name will carry through to other analysis windows such as scattergrams, histograms, and run statistics. ❍ Min area—Specifies the minimum area an event must have to be considered for contouring in either µm 2 or mm 2 . ❍ Check max area—When this is checked, the Max area box appears. Here you can specify the maximum area an event may have and still be contoured. ❍ Follow concave contour—Checking the Follow concave contour box instructs the software to continue tracing a contour through a concave shape. Use this option only when necessary, as it is computationally intensive and can increase your scan and analysis time. ❍ Color—Use this to select the color displayed in the image windows for contoured events. When you have selected a color for the contour this will be reflected in the small box on the lower right of the contour module. Contour color ❍ Fill—Check this box to fill the contoured events with the selected color in the scan image window. Revision B iCys Research Imaging Cytometer User Guide 3-55
Page 1 and 2:
User Guide DOC190-0037-001 Revision
Page 3 and 4:
Contents Chapter 1 Introduction Man
Page 5 and 6:
May 6, 2005 Contents iCys Status Ba
Page 7 and 8:
May 6, 2005 Contents Appendix B Usi
Page 9 and 10:
Chapter 1 Introduction This manual
Page 11 and 12:
May 6, 2005 Introduction System Ove
Page 13 and 14:
Chapter 2 iCys Research Imaging Cyt
Page 15 and 16:
May 6, 2005 iCys Research Imaging C
Page 17 and 18:
Page 19 and 20:
Page 21 and 22:
Page 23 and 24:
Page 25 and 26:
Page 27 and 28:
Page 29 and 30:
Page 31 and 32:
Page 33 and 34:
Page 35 and 36:
Page 37 and 38:
Page 39 and 40:
Page 41 and 42:
Page 43 and 44:
Page 45 and 46:
Page 47 and 48:
Chapter 3 iCys Cytometric Analysis
Page 49 and 50: May 6, 2005 iCys Cytometric Analysi
Page 99: May 6, 2005 iCys Cytometric Analysi
Page 147 and 148: Chapter 4 Generating Analytical Dat
Page 149 and 150: May 6, 2005 Generating Analytical D
Page 151 and 152:
May 6, 2005 Generating Analytical D
Page 153 and 154:
Page 155 and 156:
Page 157 and 158:
Page 159 and 160:
Page 161 and 162:
Page 163 and 164:
Page 165 and 166:
Page 167 and 168:
Page 169 and 170:
Page 171 and 172:
Page 173 and 174:
Page 175 and 176:
Page 177 and 178:
Page 179 and 180:
Page 181 and 182:
Page 183 and 184:
Page 185 and 186:
Page 187 and 188:
Page 189 and 190:
Page 191 and 192:
Page 193 and 194:
Page 195 and 196:
Page 197 and 198:
Appendix A Installing iCys Research
Page 199 and 200:
May 6, 2005 Installing iCys Researc
Page 201 and 202:
May 6, 2005 Installing iCys Researc
Page 203 and 204:
Appendix B Using the iNovator Toolk
Page 205 and 206:
May 6, 2005 Using the iNovator Tool
Page 207 and 208:
Page 209 and 210:
Page 211 and 212:
Page 213 and 214:
Page 215 and 216:
Page 217 and 218:
Page 219 and 220:
Page 221 and 222:
Page 223 and 224:
Page 225 and 226:
Page 227 and 228:
Page 229 and 230:
Page 231 and 232:
Page 233 and 234:
Page 235 and 236:
Page 237 and 238:
Page 239 and 240:
Page 241 and 242:
Appendix C Administrator Tasks This
Page 243 and 244:
May 6, 2005 Administrator Tasks Dis
Page 245 and 246:
May 6, 2005 Administrator Tasks Usi
Page 247 and 248:
May 6, 2005 Administrator Tasks Def
Page 249 and 250:
May 6, 2005 Administrator Tasks 5.
Page 251 and 252:
May 6, 2005 Administrator Tasks The
Page 253 and 254:
May 6, 2005 Administrator Tasks Det
Page 255 and 256:
May 6, 2005 Administrator Tasks ❍
Page 257 and 258:
Page 259 and 260:
Page 261 and 262:
May 6, 2005 Administrator Tasks ✧
Page 263 and 264:
May 6, 2005 Administrator Tasks Det
Page 265 and 266:
May 6, 2005 Administrator Tasks 5.
Page 267 and 268:
May 6, 2005 Administrator Tasks Bef
Page 269 and 270:
Appendix D Glossary This chapter co
Page 271 and 272:
May 6, 2005 Glossary C carrier The
Page 273 and 274:
May 6, 2005 Glossary EVT file An iC
Page 275 and 276:
May 6, 2005 Glossary linear amplifi
Page 277 and 278:
May 6, 2005 Glossary region A user-
Page 279 and 280:
May 6, 2005 Glossary V voltage The
show all

iCys User Guide

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?