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iCys User Guide

iCys User Guide

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<strong>iCys</strong> Research Imaging Cytometer Hardware Reference Microscope Unit<br />

Microscope Unit<br />

The microscope unit consists of the following:<br />

The Microscope<br />

❑ A standard Olympus IX-71 microscope.<br />

❑ WH10X eyepieces.<br />

❑ An adapted motorized stage – the manual stage positioning controls, located in<br />

front of the microscope, allow for coarse or fine operator control of the motorized<br />

stage positioning.<br />

❑ A brightfield illumination column and lamp housing and TH4-100 power supply<br />

for brightfield lamp.<br />

❑ An optional EpiFluorescence (Reflected fluorescence) system, including a power<br />

supply for the 100W mercury burner.<br />

❑ Sony CCD Video Camera.<br />

❑ A forward scatter detector located above the microscope stage.<br />

❑ The scanning laser beam is directed into the microscope through a side port on the<br />

microscope. This beam is directed to the microscope objective and focused on the<br />

sample located on the microscope stage. Fluorescent light, collected by the<br />

microscope objective, emerges through this port and is relayed to the<br />

photomultiplier tubes located in the optics/electronics unit.<br />

❑ Other optional microscope accessories may also be included.<br />

The microscope supplied with <strong>iCys</strong> is an Olympus IX-71 which comes with an<br />

Olympus objective turret containing 10X, 20X, and 40X Universal Plan Semi-<br />

Apochromatic objectives. It also contains a crosshair alignment tool.<br />

Note: Do not remove, replace, or add objectives to the microscope unit.<br />

<strong>iCys</strong> can be purchased with or without the AutoFocus feature. The microscope<br />

functions are directly affected by the presence of AutoFocus, as follows:<br />

❑ If your <strong>iCys</strong> system does not have the AutoFocus feature, you will need to<br />

manually move the objective lens into the correct positions as discussed in “Using<br />

the Microscope without AutoFocus” on page 2-8.<br />

❑ If your system does have AutoFocus, see “Objective Lens Automated Movement”<br />

on page 2-9.<br />

Using the Microscope without AutoFocus<br />

If your <strong>iCys</strong> system does not have the optional AutoFocus feature, then you will need<br />

to manually focus the microscope on the specimen in the area to be used during the<br />

run before starting a Test Scan or Scan & Save run.<br />

You can manually focus by either:<br />

2-8 <strong>iCys</strong> Research Imaging Cytometer <strong>User</strong> <strong>Guide</strong> Revision B

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