iCys User Guide

iCys Cytometric Analysis Software Application Overview iCys Task Bar
The Field Image Window Icons
Table 3-5 describes the functions of the Field Image window.
Table 3-5: Field Image Window Icons
Option Icon Meaning
Draw contours Displays any segmentation contours
you defined including phantom
contours
Highlight Highlights events that are within
colored regions. Use the scattergram
and histogram functions to set colors
for regions.
Zoom in Zoom in on the image. Magnification
range is from 25% to 1600%. To
zoom in on a specific area, hold down
the shift key (the cursor will turn to
magnifier) then click on the desired
area.
Zoom out Zoom out on the image.
Magnification range is from 25% to
1600%.
Display in
microns
Adjust Focus
Offset
Selects whether the X and Y cursor
positions are displayed in microns or
in pixels. Cursor positions are
reported at the bottom left of the
window.
Allows the user to adjust the sample
focus. For information on setting the
focus offset, see “Setting the User
Focus Offset” on page 3-69.
Set Focus Offset Sets the adjusted offset for use in the
current Workspace. Note that this
does not save the new offset to disk.
For more information, see “Setting
the User Focus Offset” on page 3-69.
Show
CompuColor
Displays an iCys-generated color for
each channel. The colors are overlaid
so you can see all the detectors
together to get color coding. This is
useful for scanning with multiple
detectors.
Channel Drop down menu allows you to select
which channel to view.
3-68 iCys Research Imaging Cytometer User Guide Revision B