Evolution__3rd_Edition

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.. see also Battus philenor (pipevine swallowtail butterfly); Glaucopsyche lygdamus (lycaenid butterfly); Heliconius (passion flower butterfly); Papilio (swallowtail butterfly) Caenorhabditis elegans (nematode) 32 genes 561 Hox genes 582–3 Cambrian era 535–8, 540, 645 extinctions 648, 649 Cambrian fauna 675 camouflage 6, 270 butterflies 271 see also Biston betularia (peppered moth) Canis aureus (golden jackal) 472 Canis familiaris (dog) 50, 53 Canis lupus (gray wolf) 48, 49, 50, 472 Canis mesolemas (silver-backed jackal) 50 carbon dioxide, atmospheric 538, 539 carnivores saber-toothed 429–30, 504–5, 513 survivorship curve 610 Cartesian transformation 577, 578 The Causes of <strong>Evolution</strong> (Haldane) 15 cell(s) classification 532 fossil 530–3 origin 531–3 cell lines adaptations 305–6 selection 296, 305–6 cellulose digestion 186–7 Cenozoic fauna 649 Cepea nemoralis (snail) 370, 371, 372 cetacean phylogeny 450, 451 change 4–5 biological 4 developmental 4, 5 between generations 4 species 7, 9 see also synonymous changes characters 683 adaptations 286 ancestral state 435, 436 beneficial consequences 286 classification by many 477–9 by two 476–7 conflicts 426, 427, 432–3, 436–7 reptiles 476 discordant 376 displacement 366–7, 403, 489, 683 divergence 386–7 ecological 496 environmental effects 227, 231–2 epistatic interactions 231 genetic effects 231–2 genetic variability reduction 245–6 genetic variation 246–7 genotypic effect 229–30 heritability 236–40 measurement 279 influence by many genes 226–8 new in early development 574–5 normal distribution 226–7 phenetic 348–50 polarity 433–6 polygenic 227 reliable 426 shared by common descent 447 between species 425 unreliable 426 value 228–9, 234 variance 231–2 see also inheritance of acquired characters; morphological characters Cheetham, A. 603–4 Cheilostomata bryozoans 670–1 chemical theory 57 chemotrophs 531 Chetverikov, Sergei 16 Chicxulub crater (Yucatan, Mexico) 652 chimpanzee see Pan troglodytes (chimpanzee) chloroplasts 26, 266, 533, 683 chloroquine 213 Christian fundamentalism 67–8 chromosomes 22, 683 deletions 31 duplication 31 evolution 565–6 fusion 360–1, Plate 8 giant 82 human 33 inversions 82, 83, 566, 567, 685 mutations 29–31 number 82–3 recombination 36 supernumerary 83 translocation 29–30 variation 82–3 cichlid fish, African see Pundamilia (African cichlid fish) cistron 308, 309 clades 683 hedgehogs 500–1 unranked 484 cladism 474, 475, 479–81, 683 hierarchical classification 487 Index 735 cladistic techniques 425–6, 427, 474 character analysis 436–7 see also area cladogram Clarksonia 538 class (taxonomic) 472, 483 classification 48, 49, 63, 66, 472, 683 cellular life 532 cladistic school 474–5, 479–81, 482 evolutionary school 474–5, 485–6, 487, 684 hierarchical 487 objective 475–6, 478, 480 phenetic principles 472–5 phylogenetic 474 inferred phylogenetic relations 479–85 subjective 478 vertebrates 65–6 see also Linnaean hierarchy; phenetic classification; taxonomy climate 497–500, 501 extinctions 655, 667 horse evolution 593n clines 362–3, 683 stepped 363, 409–12, 689 cloning 683 sex advantages 321 technologies 315, 316 cluster statistics 476–9 Cnidaria 582, 583 coadaptation 197, 216, 260–2, 614–15 coevolution 615 coal deposits 539 coalescence 144 cod 72 codons 683 bias 187–9 see also stop codons coevolution 614–40, 683 antagonistic 638–40 “arms race” 632–6 coadaptations 614–15 diffuse 623 diversification 622–3 grasses with mammals 540, 593n insect–plant 616–20, 621, 622–3 macroevolution 640 parasite–host 623–5, 626, 627–8, 629, 630–2 colchicine 53 colonization adaptive radiation 644 evolutionary rate 598 of land 645 coloration body 288 patterns in butterflies 271
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.. EVOLUTION
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© 2004 by Blackwell Science Ltd a
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vi Brief Contents PART 5. MACROEVOL
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viii Full Contents 3.5 Ring “spec
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x Full Contents 7.2 Rates of molecu
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xii Full Contents 10.5 Genetics of
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xiv Full Contents PART 4. EVOLUTION
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xvi Full Contents 14.12 Identificat
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xviii Full Contents 17.7 Geographic
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xx Full Contents 21.4.3 Ordovician
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Preface The theory of evolution is
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xxiv Preface evolve resistance to d
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.. Introduction Part one When Darwi
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4 PART 1 / Introduction Evolution i
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6 PART 1 / Introduction Examples ex
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8 PART 1 / Introduction Time (a) (b
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10 PART 1 / Introduction . . . look
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12 PART 1 / Introduction Time (a) (
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14 PART 1 / Introduction Figure 1.7
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18 PART 1 / Introduction . . . and
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20 PART 1 / Introduction Further re
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22 PART 1 / Introduction DNA is car
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24 PART 1 / Introduction Most genes
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26 PART 1 / Introduction Table 2.1
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28 PART 1 / Introduction Original D
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30 PART 1 / Introduction (a) Transp
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32 PART 1 / Introduction . . . per
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34 PART 1 / Introduction Dominance
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Figure 2.11 Two populations with 10
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42 PART 1 / Introduction Study and
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44 PART 1 / Introduction Life could
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48 PART 1 / Introduction Tooth qual
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50 PART 1 / Introduction Artificial
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52 PART 1 / Introduction Ring speci
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54 PART 1 / Introduction Human obse
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58 PART 1 / Introduction 5' pG Anti
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62 PART 1 / Introduction (a) α-hem
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64 PART 1 / Introduction Age (Myr a
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66 PART 1 / Introduction The groups
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68 PART 1 / Introduction The scient
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70 PART 1 / Introduction Study and
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Plate 3 Here in the lower row are s
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Plate 6 Scrub jays (Aphelocoma coer
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Plate 8 Chromosomal races of the ho
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Plate 10 Geological map of North Am
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72 PART 1 / Introduction Cod produc
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74 PART 1 / Introduction The strugg
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76 PART 1 / Introduction Many chara
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82 PART 1 / Introduction Chromosome
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86 PART 1 / Introduction The condit
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90 PART 1 / Introduction Summary 1
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.. Evolutionary Genetics Part two T
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.. 5 The Theory of Natural Selectio
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.. Figure 5.1 The general model of
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.. . . . and use Mendel’s rules t
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.. A simpler proof of the Hardy- We
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.. The MN human blood group system
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.. CHAPTER 5 / The Theory of Natura
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.. We need to know more to understa
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.. Figure 5.4 Peppered moths natura
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.. Mark-recapture experiments sugge
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.. Manchester The fitness estimates
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.. Pests, such as mosquitoes, evolv
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.. Figure 5.8 The mortality of mosq
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.. Box 5.2 Resistance Management Th
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.. Other factors will be at work in
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.. . . . which can sometimes be use
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.. Figure 5.9 The global incidence
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.. In host-parasite relations, the
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.. Populations may be subdivided CH
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.. We construct a model of gene fre
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.. We construct a model of selectio
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.. Further reading CHAPTER 5 / The
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.. 6 Random Events in Population Ge
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.. Box 6.1 Random Sampling in Genet
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.. Probability of polymorphism 1.0
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.. Evolution can occur by random dr
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.. Random drift has consequences fo
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.. Generation 1 Generation2 Adults
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.. CHAPTER 6 / Random Events in Pop
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.. Heterozygosity ( H ) 1.0 0.9 0.8
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.. Summary 1 In a small population,
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.. 7 Natural Selection and Random D
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.. Two extreme views b selectionist
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.. The original neutral theory has
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.. . . . and levels of polymorphism
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.. homozygotes by normal Mendelian
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.. Amino acid differences 1.0 0.9 0
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.. Globin evolution in “living fo
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.. Long-generation species, e.g., w
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.. Observed heterozygosity 1.0 0.8
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.. The nearly neutral theory can ex
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.. Insulin illustrates the effect o
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.. CHAPTER 7 / Natural Selection an
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.. Biologists came to accept, throu
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.. Elevated dN/dS ratios are observ
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.. Box 7.4 Model Organisms for Biom
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.. But the test has proved illumina
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.. Evidence shows that synonymous c
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.. The genomic era is allowing new
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.. Summary 1 The neutral theory of
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.. Study and review questions 1 Dra
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.. The tiger swallowtail butterfly
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.. Mimicry requires the correct com
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.. A haplotype is a haploid combina
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.. Linkage disequilibrium ( D) r =
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.. The more complex multilocus mode
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.. Expected frequency ( piqi ) (a)
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.. A model of haplotype frequency c
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.. Evidence for linkage disequilibr
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.. (proportion of polymorphic sites
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.. CHAPTER 8 / Two-locus and Multil
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.. Adaptive topographies can be use
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.. Mean population fitness ( w ) -
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.. p' 0 1 0 Frequency of A allele S
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.. Study and review questions 1 Her
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.. Beak size influences feeding eff
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.. Population size Seed √depth ×
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.. Continuous characters are influe
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.. Genetic and environmental influe
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.. Several non-additive genetic fac
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.. Box 9.1 Some Statistical Terms U
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.. Parent-offspring similarity depe
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.. Frequency Frequency Generation 1
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.. New variation can be introduced
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.. (a) 1976-1977 (b) 1981-1982 (c)
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.. Figure 9.11 (a) The main veins i
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.. Certain non-linear relations can
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.. Behavior Physiology Life history
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.. Some heritable characters do not
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.. Further reading CHAPTER 9 / Quan
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.. Adaptation and Natural Selection
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.. 10Adaptive Explanation T his cha
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.. . . . factually, ... . . . or th
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.. Not all evolution is adaptive CH
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.. Figure 10.2 Stages in the evolut
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.. Some critics suggest that the in
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.. Box 10.1 Molecular Cooption The
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.. Fitness (a) (b) Small mutation L
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.. Figure 10.5 A cross between the
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.. . . . by experiment, ... . . . a
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.. Figure 10.6 The fruits of (a) Cr
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.. Heterozygous advantage may lead
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.. Figure 10.7 Developmental asymme
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.. . . . that can be tested between
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.. Fitness (a) Time 1 (b) Time 2 (c
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.. Fitness Fitness (a) Time 1 (c) T
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.. Imperfect adaptations may or may
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.. The “design” of an eye for s
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.. hypothesis of adaptation or cons
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.. Study and review questions 1 Wha
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.. An adaptation may benefit one le
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.. The sd gene gains an advantage f
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.. CHAPTER 11 / The Units of Select
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.. We define Hamilton’s rule Hami
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.. Kin selection is at work in this
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.. Selfish The theories of group se
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.. Box 11.1 Group Selection for Egg
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.. The unit of selection, in a seco
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.. * * The word “gene” is being
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.. Summary 1 Adaptations evolve by
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.. in Sexual Reproduction 12Adaptat
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.. Figure 12.2 Non-reproductive sex
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.. Figure 12.3 Evolution in (a) ase
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.. Asexual reproduction has a spind
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.. . . . as illustrated by a motor
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.. Log fitness of organisms Number
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.. Figure 12.7 Frequency changes of
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.. Genetic cycles in snails are con
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.. Darwin provided comparative evid
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.. . . . which may explain extreme
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.. Theory requires open-ended choic
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.. But selection may have removed h
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.. Courtship bouts Net reproductive
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.. Theory predicts deviations from
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.. CHAPTER 12 / Adaptations in Sexu
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.. Study and review questions 1 Wha
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346 PART 4 / Evolution and Diversit
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17Evolutionary Biogeography B iogeo
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522 PART 5 / Macroevolution looked
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524 PART 5 / Macroevolution Fossili
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526 PART 5 / Macroevolution Era Per
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528 PART 5 / Macroevolution N = N 0
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530 PART 5 / Macroevolution Early l
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532 PART 5 / Macroevolution Cells h
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.. Multicellular life originated ov
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.. Present ~540 Myr ~1,200 Myr Echi
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.. Figure 18.8 The rise of the angi
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.. Figure 18.9 The origin of tetrap
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.. Probainognathus Thrinaxodon Proc
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.. . . . and cynodonts but their te
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.. . . . and sexual dimorphism all
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.. Homo sapiens c. 100,000 years ag
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.. Macroevolution may be due to ext
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.. Summary 1 Fossils are formed whe
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.. Study and review questions 1 Rev
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.. Evolutionary genomics aims to an
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.. Figure 19.1 The history of the h
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.. (a) A (b) 2 1 B C Vertebrate 1 2
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.. Following symbiosis ... . . . ge
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.. X and Y chromosomes evolve apart
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.. Figure 19.5 (a) A chromosomal in
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.. Mice do not show the same patter
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.. Study and review questions 1 (a)
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.. Morphological evolution is drive
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.. Figure 20.2 (a) Evolution by ter
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.. Developmental change can be by h
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.. . . . than might be expected fro
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.. A similar gene works in eye deve
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.. Figure 20.6 History of the Hox g
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.. Changes in arthropod limbs are a
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.. Switching systems may have made
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.. Study and review questions 1 If
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.. Horse teeth are an example of ho
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.. Horse teeth show a representativ
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.. Figure 21.2 Possible phylogeny o
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.. Figure 21.3 The relation between
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.. . . . disappear after the measur
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.. Box 21.1 Two Meanings of Gradual
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.. Time Punctuated equilibrium extr
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.. Time General younging direction
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.. Score Change in score per millio
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.. Time (Myr) Two species/million y
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.. Summary CHAPTER 21 / Rates of Ev
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.. 22Coevolution C oevolution happe
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.. Figure 22.2 Coevolution means th
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.. Pollinator relationships have le
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.. (a) Time Character Plant Insect
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.. (a) Plant ( Bursera ) sarukhanii
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.. Abiotic pollination Biotic polli
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.. Myxomatosis reduced rabbit popul
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.. Virulence depends on ... . . . t
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.. lower Virulence higher 1.1 1.0 0
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.. . . . is probably due to cospeci
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.. Brain size . . . are used to mea
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.. Incidence of repair 0.6 0.5 0.4
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.. Taxonomic survivorship curves ar
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.. . . . or a static equilibrium ..
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.. present. Biotic pollination, in
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.. 23Extinction and Radiation T his
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.. Figure 23.1 (a) The number of fa
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.. Box 23.1 Pseudoextinction Specie
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.. Figure 23.2 The observed extinct
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.. Position (m) 300 340 330 KT 0 10
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.. The fossil evidence can be teste
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.. Several factors may work interac
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.. Several models could explain why
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.. Box 23.2 Changes in Extinction R
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.. Molluskan larval types can be in
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.. (a) (b) Planktotrophic larvae No
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.. Figure 23.10 Species selection b
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.. CHAPTER 23 / Extinction and Radi
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.. Taxonomic replacements can be co
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.. Mammals proliferated in the earl
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.. Time (a) Observed incompleteness
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.. Number of families Number of fam
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.. Early research established the m
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.. 8 If natural selection favors on
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.. Study and review questions 1 Why
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.. Biogenetic law The name given by
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.. genetic load A reduction in the
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.. phenetic classification using la
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.. stabilizing selection Selection
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.. first terrestrial tetrapods; and
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.. photosynthesis a probably evolve
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.. Chapter 15 1. 2. A B C D E C A B
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.. 2. The eyes of insects and verte
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.. References Abouheif, E., Akam, M
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.. References 701 Bell, G. (1997a).
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.. References 703 Byers, J.A. (1997
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.. References 705 Cronin, T.M. & Sc
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.. References 707 Eldredge, N. & Go
Page 1486: .. References 709 Gingerich, P.D. (
Page 1490: .. References 711 Hamilton, W.D. (1
Page 1494: .. References 713 Huelsenbeck, J.P.
Page 1498: .. References 715 King, M-C. & Wils
Page 1502: .. References 717 Lens, L., van Don
Page 1506: .. References 719 Maynard Smith, J.
Page 1510: .. References 721 Nielsen, R. (2001
Page 1514: .. References 723 Philippe, H. & Fo
Page 1518: .. References 725 Runnegar, B. (200
Page 1522: .. References 727 Singer, R. (ed.)
Page 1526: .. References 729 True, J.R., Weir,
Page 1530: .. References 731 Wiley, E.O. (1988
Page 1534: .. Index Note: page numbers in ital
Page 1540: 736 Index coloration (cont.): prezy
Page 1544: 738 Index evolution (cont.): long-t
Page 1548: 740 Index genetics (cont.): charact
Page 1552: 742 Index immunoglobulins 24 immuno
Page 1556: 744 Index molecular distance 440-2
Page 1560: 746 Index parasites (cont.): genome
Page 1564: 748 Index reproductive development
Page 1568: 750 Index synonymous changes (cont.
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