Ergebnisbericht 2010/11 - Helmholtz-Zentrum für Infektionsforschung

• Shiloach,J. & Rinas,U. (2011) Bacterial cultivation for producing
of proteins and other biological products. In Manual of industrial
microbiology and biotechnology (Demain,A.L., ed), American Society
for Microbiology (ASM), Washington DC., in press
• Fraatz,M.A., Riemer,S.J.L., Stober,R., Kaspera,R., Nimtz,M.,
Berger,R.G., & Zorn,H. (2011) A novel oxygenase from Pleurotus
sapidus transforms valencene to nootkatone. Journal of Molecular
Catalysis B: Enzymatic, in press
AG Rekombinante Proteinexpression | Dr. Joop van den Heuvel
• Lu,X., Sun,J., Nimtz,M., Wissing,J., Zeng,A.-P., & Rinas,U. (2010) The
intra- and extracellular proteome of Aspergillus niger growing on defi
ned medium with xylose or maltose as carbon substrate. Microbial
Cell Factories 9, 1-13.
• Wilke,S., Krausze,J., Gossen,M., Gröbe,L., Jager,V., Gherardi,E., van
den Heuvel, J., & Bussow,K. (2010) Glycoprotein production for
structure analysis with stable, glycosylation mutant CHO cell lines
established by fl uorescence-activated cell sorting. Protein Science 19,
1264-1271.
• Bals,C., Schambach,A., Meyer,J., Scheper,T., & Rinas,U. (2011) Expression
and purifi cation of bioactive soluble murine stem cell factor
from recombinant Escherichia coli using thioredoxin as fusion partner.
Journal of Biotechnology 152, 1-8.
• Shiloach,J. & Rinas,U. (2011) Bacterial cultivation for producing
of proteins and other biological products. In: Manual of industrial
microbiology and biotechnology (Demain,A.L., ed.), American
Society for Microbiology (ASM), Washington DC, in press.
AG Zelluläre Proteomforschung | Dr. Lothar Jänsch
• Badar,M., Hemmen,K., Nimtz,M., Stieve,M., Stiesch,M., Lenarz,T.,
Hauser,H., Möllmann,U., Vogt,S., Schnabelrauch,M., & Müller,P.P.*
(2010) Evaluation of madurahydroxylactone as a slow release antibacterial
implant coating. Open Biomedical Engineering Journal 4,
263-270.
• Eisele,N., Linke,D., Bitzer,K., Na’amnieh,S., Nimtz,M., & Berger,R.G.
(2010) The fi rst characterized asparaginase from a basidiomycete,
Flammulina velutipes. Bioresource Technology 102, 3316-3321.
• El-Banna,A., Hajirezaei,M.R., Wissing,J., Ali,Z., Vaas,L., Heine-
Dobbernack,E., Jacobsen,H.J., Schumacher,H.M., & Kiesecker,H.
(2010) Over-expression of PR-10a leads to increased salt and osmotic
tolerance in potato cell cultures. Journal of Biotechnology 150, 277-
287.
• Klodmann,J., Sunderhaus,S., Nimtz,M., Jänsch,L., & Braun,H.P. (2010)
Internal architecture of mitochondrial complex I from Arabidopsis
thaliana. Plant Cell 22, 797-810.
• Lu,X., Sun,J., Nimtz,M., Wissing,J., Zeng,A.-P., & Rinas,U. (2010) The
intra- and extracellular proteome of Aspergillus niger growing on defi
ned medium with xylose or maltose as carbon substrate. Microbial
Cell Factories 9, 1-13.
• Maahs,D.M., Siwy,J., Argiles,A., Cerna,M., Delles,C., Dominiczak,A.F.,
Gayrard,N., Iphöfer,A., Jänsch,L., Jerums,G., Medek,K., Mischak,H.,
Navis,G.J., Roob,J.M., Rossing,K., Rossing,P., Rychlik,I., Schiffer,E.,
Schmieder,R.E., Wascher,T.C., Winklhofer-Roob,B.M., Zimmerli,L.U.,
Zurbig,P., & Snell-Bergeon,J.K. (2010) Urinary collagen fragments
are signifi cantly altered in diabetes: a link to pathophysiology.
PLoS ONE 5.
• Mischak,H., Kolch,W., Aivaliotis,M., Bouyssie,D., Court,M., Dihazi,H.,
Dihazi,G.H., Franke,J., Garin,J., de Peredo,A.G., Iphöfer,A., Jänsch,L.,
Lacroix,C., Makridakis,M., Masselon,C., Metzger,J., Monsarrat,B.,
Mrug,M., Norling,M., Novak,J., Pich,A., Pitt,A., Bongcam-Rudloff,E.,
Siwy,J., Suzuki,H., Thongboonkerd,V., Wang,L.-S., Zoidakis,J.,
Zurbig,P., Schanstra,J.P., & Vlahou,A. (2010) Comprehensive human
urine standards for comparability and standardization in clinical
proteome analysis. Proteomics - Clinical Applications 4, 464-478.
WISSENSCHAFTLICHER ERGEBNISBERICHT | Veröffentlichungen
• Pommerenke,C., Müsken,M., Becker,T., Dötsch,A., Klawonn,F., &
Häußler,S. (2010) Global genotype-phenotype correlations in Pseudomonas
aeruginosa. PLoS Pathogens 6, 89-90.
153
• Steinke,N., Kaller,M., Nimtz,M., Baro,A., & Laschat,S. (2010) Columnar
liquid crystals derived from crown ethers with two lateral estersubstituted
ortho-terphenyl units: Unexpected destabilisation of the
mesophase by potassium iodide. Liquid Crystals 37, 1139-1149.
• Stepanova,T., Smal,I., van,H.J., Akinci,U., Liu,Z., Miedema,M.,
Limpens,R., van,H.M., van der,R.M., Poot,R., Grosveld,F.,
Mommaas,M., Meijering,E., & Galjart,N. (2010) History-dependent
catastrophes regulate axonal microtubule behavior. Current biology
20, 1023-1028.
• Trunk,K., Benkert,B., Quack,N., Munch,R., Scheer,M., Garbe,J.,
Jänsch,L., Trost,M., Wehland,J., Buer,J., Jahn,M., Schobert,M., &
Jahn,D. (2010) Anaerobic adaptation in Pseudomonas aeruginosa:
defi nition of the Anr and Dnr regulons. Environmental Microbiology
12, 1719-1733.
• Tschumitschew,K. & Klawonn,F. (2010) Incremental quantile estimation.
Evolving Systems 1, 253-264.
• Tschumitschew,K. & Klawonn,F. (2010) The need for benchmarks
with data from stochastic processes and meta-models in evolving
systems. In Proceedings of the International Symposium on Evolving
Intelligent Systems (Angelov,P., Filev,D., & Kasabov,N., eds), pp. 30-
33. SSAISB, Leicester.
• Tschumitschew,K. & Klawonn,F. (2010) AVEDA: Statistical tests for
fi nding interesting visulatisations. 5711 LNAI (Part 1) Lecture Notes
in Computer Science (including subseries Lecture Notes in Artifi cial
Intelligence and Lecture Notes in Bioinformatics), 235-242.
• Krone,M. & Klawonn,F. (2011) Rank correlation coeffi cient correction
by removing worst cases. In: Information Processing and Management
of Uncertainty in Knowledge-Based Systems: Theory and Methods
(Hüllermeier,E., Kruse,R., & Hoffmann,F., eds.), Springer, Berlin,
pp. 356-364.
• Winkler,R., Klawonn,F., & Kruse,R. (2011) Fuzzy clustering with polynomial
fuzzifi er function in connection with m-estimators. Applied
and Computational Mathematics 10, 146-163.
• Eberl,L. & Riedel,K. (2011) Mining quorum sensing regulated proteins
- role of bacterial cell-to-cell communication in global gene
regulation as assessed by proteomics. Proteomics, in press
• Hebecker,S., Arendt,W., Heinemann,I.U., Tiefenau,J.H., Nimtz,M.,
Rohde,M., Soll,D., & Moser,J. (2011) Alanyl-phosphatidylglycerol synthase:
mechanism of substrate recognition during tRNA-dependent
lipid modifi cation in Pseudomonas aeruginosa. Molecular Microbiology,
in press.
• Hemmen,K., Reinl,T., Buttler,K., Behler,F., Dieken,H., Jänsch,L.,
Wilting,J., & Weich,H.A.*. (2011) High-resolution mass spectrometric
analysis of the secretome from mouse lung endothelial progenitor
cells. Angiogenesis, in press.
AG Mikrobielle Proteomik | Prof. Dr. Katharina Riedel
• Bosshard,F., Riedel,K., Schneider,T., Geiser,C., Bucheli,M., & Egli,T.
(2010) Protein oxidation and aggregation in UVA-irradiated
Escherichia coli cells as signs of accelerated cellular senescence.
Environmental Microbiology 12, 2931-2945.
• Carranza,P., Grunau,A., Schneider,T., Hartmann,I., Lehner,A.,
Stephan,R., Gehrig,P., Grossmann,J., Groebel,K., Hoelzle,L.E.,
Eberl,L., & Riedel,K. (2010) A gel-free quantitative proteomics approach
to investigate temperature adaptation of the food-borne pathogen
Cronobacter turicensis 3032. Proteomics 10, 3248-3261.
• Grunau,A. & Riedel,K. (2011) Exoenzymes. In Encyclopaedia of Geobiology
(Reiter,J. & Thiel,V., eds), pp. 355-359. Springer.