Ergebnisbericht 2010/11 - Helmholtz-Zentrum für Infektionsforschung

• Copeland,A., Sikorski,J., Lapidus,A., Nolan,M., Glavina,T., Del,R.,
Lucas,S., Chen,F., Tice,H., Pitluck,S., Cheng,J.F., Pukall,R.,
Chertkov,O., Brettin,T., Han,C., Kuske,C., Bruce,D., Goodwin,L.,
Ivanova,N., Mavromatis,K., Mikhailova,N., Chen,A., Palaniappan,K.,
Chain,P., Rohde,M., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., & Detter,J.C. (2010) Erratum
to: Complete genome sequence of Atopobium parvulum type strain
(IPP 1246). Standards in Genomic Sciences 2, 361-362.
• Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Göker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.,
& Lapidus,A. (2010) Complete genome sequence of Intrasporangium
calvum type strain (7 KIP). Standards in Genomic Sciences 3, 294-303.
• Dietrich,N., Rohde,M., Geffers,R., Kroger,A., Hauser,H., Weiss,S., &
Gekara,N.O. (2010) Mast cells elicit proinfl ammatory but not type I
interferon responses upon activation of TLRs by bacteria. Proceeding
of the National Academy of Sciences of the United States of America
107, 8748-8753.
• Djao,O.D., Zhang,X., Lucas,S., Lapidus,A., Del Rio,T.G., Nolan,M.,
Tice,H., Cheng,J.F., Han,C., Tapia,R., Goodwin,L., Pitluck,S., Liolios,K.,
Ivanova,N., Mavromatis,K., Mikhailova,N., Ovchinnikova,G.,
Pati,A., Brambilla,E., Chen,A., Palaniappan,K., Land,M., Hauser,L.,
Chang,Y.J., Jeffries,C.D., Rohde,M., Sikorski,J., Spring,S., Göker,M.,
Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., & Klenk,H.P. (2010) Complete genome
sequence of Syntrophothermus lipocalidus type strain (TGB-C1).
Standards in Genomic Sciences 3, 268-275.
• Foster,B., Pukall,R., Abt,B., Nolan,M., Glavina Del,R.T., Chen,F.,
Lucas,S., Tice,H., Pitluck,S., Cheng,J.F., Chertkov,O., Brettin,T.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Ivanova,N., Mavromatis,K.,
Pati,A., Mikhailova,N., Chen,A., Palaniappan,K., Land,M., Hauser,L.,
Chang,Y.J., Jeffries,C.D., Chain,P., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., &
Lapidus,A. (2010) Complete genome sequence of Xylanimonas cellulosilytica
type strain (XIL07). Standards in Genomic Sciences 2, 1-8.
• Garbe,J., Wesche,A., Bunk,B., Kazmierczak,M., Selezska,K., Rohde,C.,
Sikorski,J., Rohde,M., Jahn,D., & Schobert,M. (2010) Characterization
of JG024, a Pseudomonas aeruginosa PB1-like broad host range
phage under simulated infection conditions. BMC Microbiology 10 ,301.
• Glavina Del,R.T., Abt,B., Spring,S., Lapidus,A., Nolan,M., Tice,H.,
Copeland,A., Cheng,J.F., Chen,F., Bruce,D., Goodwin,L., Pitluck,S.,
Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P.,
Saunders,E., Detter,J.C., Brettin,T., Rohde,M., Göker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., &
Lucas,S. (2010) Complete genome sequence of Chitinophaga pinensis
type strain (UQM 2034). Standards in Genomic Sciences 2, 87-95.
• Göker,M., Held,B., Lapidus,A., Nolan,M., Spring,S., Yasawong,M.,
Lucas,S., Glavina Del,R.T., Tice,H., Cheng,J.F., Goodwin,L., Tapia,R.,
Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Mikhailova,N.,
Pati,A., Chen,A., Palaniappan,K., Brambilla,E., Land,M., Hauser,L.,
Chang,Y.J., Jeffries,C.D., Brettin,T., Detter,J.C., Han,C., Rohde,M.,
Sikorski,J., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., & Klenk,H.P. (2010) Complete genome
sequence of Ignisphaera aggregans type strain (AQ1.S1). Standards in
Genomic Sciences 3, 66-75.
• Göker,M., Held,B., Lucas,S., Nolan,M., Yasawong,M., Glavina Del,R.T.,
Tice,H., Cheng,J.F., Bruce,D., Detter,J.C., Tapia,R., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Mikhailova,N.,
Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Rohde,M., Sikorski,J., Pukall,R., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., &
Lapidus,A. (2010) Complete genome sequence of Olsenella uli type
strain (VPI D76D-27C). Standards in Genomic Sciences 3, 76-84.
WISSENSCHAFTLICHER ERGEBNISBERICHT | Veröffentlichungen
155
• Gronow,S., Welnitz,S., Lapidus,A., Nolan,M., Ivanova,N., Glavina
Del,R.T., Copeland,A., Chen,F., Tice,H., Pitluck,S., Cheng,J.F.,
Saunders,E., Brettin,T., Han,C., Detter,J.C., Bruce,D., Goodwin,L.,
Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Pati,A., Mavromatis,K.,
Mikhailova,N., Chen,A., Palaniappan,K., Chain,P., Rohde,M.,
Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P., & Lucas,S. (2010) Complete genome sequence
of Veillonella parvula type strain (Te3). Standards in Genomic
Sciences 2, 57-65.
• Han,C., Gu,W., Zhang,X., Lapidus,A., Nolan,M., Copeland,A., Lucas,S.,
Del Rio,T.G., Tice,H., Cheng,J.F., Tapia,R., Goodwin,L., Pitluck,S.,
Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Schneider,S., Rohde,M., Göker,M., Pukall,R., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.,
& Detter,J.C. (2010) Complete genome sequence of Thermaerobacter
marianensis type strain (7p75a). Standards in Genomic Sciences 3,
337-345.
• Hänisch,J., Ehinger,J., Ladwein,M., Rohde,M., Derivery,E., Bosse,T.,
Steffen,A., Bumann,D., Misselwitz,B., Hardt,W.D., Gautreau,A.,
Stradal,T.B.*., & Rottner,K. (2010) Molecular dissection of Salmonella-induced
membrane ruffl ing versus invasion. Cellular Microbiology
12, 84-98.
• Hoffmann,C., Berking,A., Agerer,F., Buntru,A., Neske,F.,
Chhatwal,G.S*., Ohlsen,K., & Hauck,C.R. (2010) Caveolin limits
membrane microdomain mobility and integrin-mediated uptake of
fi bronectin-binding pathogens. Journal of Cell Science 123, 4280-4291.
• Hu,Y., van der,G.R., Besra,G.S., Gurcha,S.S., Liu,A., Rohde,M.,
Singh,M., & Coates,A. (2010) 3-Ketosteroid 9alpha-hydroxylase is an
essential factor in the pathogenesis of Mycobacterium tuberculosis.
Molecular Microbiology 75, 107-121.
• Itzek,A., Gillen,C.M., Fulde,M., Friedrichs,C., Rodloff,A.C.,
Chhatwal,G.S*., & Nitsche-Schmitz,D.P. (2010) Contribution of plasminogen
activation towards the pathogenic potential of oral streptococci.
PLoS ONE 5, e13826.
• Ivanova,N., Sikorski,J., Jando,M., Munk,C., Lapidus,A., Glavina
Del,R.T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Mavromatis,K., Mikhailova,N.,
Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Meincke,L., Brettin,T., Detter,J.C., Rohde,M., Göker,M.,
Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., &
Klenk,H.P. (2010) Complete genome sequence of Geodermatophilus
obscurus type strain (G-20). Standards in Genomic Sciences 2, 158-167.
• Ivanova,N., Sikorski,J., Jando,M., Lapidus,A., Nolan,M., Lucas,S.,
Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Chen,F., Bruce,D.,
Goodwin,L., Pitluck,S., Mavromatis,K., Ovchinnikova,G., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Chain,P., Saunders,E., Han,C., Detter,J.C., Brettin,T., Rohde,M.,
Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Klenk,H.P., & Kyrpides,N.C. (2010) Complete genome sequence
of Gordonia bronchialis type strain (3410). Standards in Genomic
Sciences 2, 19-28.
• Ivanova,N., Daum,C., Lang,E., Abt,B., Kopitz,M., Saunders,E.,
Lapidus,A., Lucas,S., Glavina Del,R.T., Nolan,M., Tice,H., Copeland,A.,
Cheng,J.F., Chen,F., Bruce,D., Goodwin,L., Pitluck,S., Mavromatis,K.,
Pati,A., Mikhailova,N., Chen,A., Palaniappan,K., Land,M., Hauser,L.,
Chang,Y.J., Jeffries,C.D., Detter,J.C., Brettin,T., Rohde,M., Göker,M.,
Bristow,J., Markowitz,V., Eisen,J.A., Hugenholtz,P., Kyrpides,N.C., &
Klenk,H.P. (2010) Complete genome sequence of Haliangium ochraceum
type strain (SMP-2). Standards in Genomic Sciences 2, 96-106.
• Jensch,I., Gamez,G., Rothe,M., Ebert,S., Fulde,M., Somplatzki,D.,
Bergmann,S., Petruschka,L., Rohde,M., Nau,R., & Hammerschmidt,S.
(2010) PavB is a surface-exposed adhesin of Streptococcus pneumoniae
contributing to nasopharyngeal colonization and airways infections.
Molecular Microbiology 77, 22-43.
• Kaur,S.J., Nerlich,A., Bergmann,S., Rohde,M., Fulde,M., Zahner,D.,
Hanski,E., Zinkernagel,A., Nizet,V., Chhatwal,G.S.*., & Talay,S.R.
(2010) The CXC chemokine-degrading protease SpyCep of Streptococcus
pyogenes promotes its uptake into endothelial cells. Journal of
Biological Chemistry 285, 27798-27805.