Molecular Biology of the Cell by Bruce Alberts, Alexander Johnson, Julian Lewis, David Morgan, Martin Raff, Keith Roberts, Peter Walter by by Bruce Alberts, Alexander Johnson, Julian Lewis, David Morg

1342 Chapter 24: The Innate and Adaptive Immune Systems
References
General
Murphy K (2011) Janeway’s Immunobiology, 8 th ed. New York: Garland
Science.
Abbas AK, Lichtman AH & Pillai S (2014) Cellular and Molecular
Immunology, 8 th ed. Philadelphia: WB Saunders.
Parham P (2015) The Immune System, 4th ed. New York: Garland
Science.
The Innate Immune System
Beutler B & Rietschel ET (2003) Innate immune sensing and its roots:
the story of endotoxin. Nat. Rev. Immunol. 3, 169–176.
Davis BK, Wen H & Ting JP (2011) The inflammasome NLRs in
immunity, inflammation, and associated diseases. Annu. Rev.
Immunol. 29, 707–735.
Gallo RL & Hooper LV (2012) Epithelial antimicrobial defence of the skin
and intestine. Nat. Rev. Immunol. 12, 503–516.
Hoffmann J & Akira S (2013) Innate immunity. Curr. Opin. Immunol.
25, 1–3.
Holers VM (2014) Complement and its receptors: new insights into
human disease. Annu. Rev. Immunol. 32, 433–459.
Ivashkiv LB & Donlin LT (2014) Regulation of type 1 interferon
responses. Nat. Rev. Immunol. 14, 36–49.
Janeway CA Jr & Medzhitov R (2002) Innate immune recognition. Annu.
Rev. Immunol. 20, 197–216.
Kumar H, Kawai T & Akira S (2011) Pathogen recognition by the innate
immune system. Int. Rev. Immunol. 30, 16–34.
Lannier LL (2008) Up on the tightrope: natural killer cell activation and
inhibition. Nat. Immunol. 9, 495–502.
Murray PJ & Wynn TA (2011) Protective and pathogenic functions of
macrophages. Nat. Rev. Immunol. 11, 723–737.
Pluddemann A, Mukhopadhyay S & Gordon S (2011) Innate immunity
to intracellular pathogens: macrophage receptors and responses to
microbial entry. Immunol. Rev. 240, 11–24.
Schenten D & Medzhitov R (2011) The control of adaptive immune
responses by the innate immune system. Adv. Immunol. 109,
87–124.
Overview of the Adaptive Immune System
Denucci CC, Mitchell JS & Shimizu Y (2009) Integrin function in T-cell
homing to lymphoid and nonlymphoid sites: getting there and
staying there. Crit. Rev. Immunol. 29, 87–109.
Girard J-P, Moussion C & Förster R (2012) HEVs, lymphatics and
homeostatic immune cell trafficking in lymph nodes. Nat. Rev.
Immunol. 12, 762–773.
Klein L, Yudanin NA & Restifo NP (2013) Human memory T cells:
generation, compartmentalization and homeostasis. Nat. Rev.
Immunol. 14, 24–35.
MacKeod MK, Kappler JW & Marrack P (2010) CD4 memory T cells:
generation, reactivation, and reassignment. Immunol. 130, 10–15.
McHeyzer-Williams M, Okitsu S, Wang N & McHeyzer-Williams L (2011)
Molecular programming of B cell memory. Nat. Rev. Immunol. 12,
24–34.
Rothenburg EV (2014) Transcriptional control of early T and B cell
developmental choices. Annu. Rev. Immunol. 32, 283–321.
Schwartz RH (2012) Historical overview of immunological tolerance.
Cold Spr. Harb. Perspect. Biol. 4, 1–14.
Sprent J & Surh CD (2011) Normal T cell homeostasis: the conversion
of naïve cells into memory-phenotype cells. Nat. Immunol. 12,
478–484.
B Cells and Immunoglobulins
Eibel H, Kraus H, Sic H et al. (2014) B cell biology: an overview. Curr.
Allergy Asthma Rep. 14, 434–444.
Ganesh K & Neuberger MS (2011) The relationship between hypothesis
and experiment in unveiling the mechanisms of antibody gene
diversification. FASEB J. 25, 1123–1132.
Kurosaki T, Shinohara H, & Baba Y (2010) B cell signalling and fate
decision. Annu. Rev. Immunol. 29, 21–55.
Nimmerjahn F & Ravetch JV (2007) Fc-receptors as regulators of
immunity. Adv. Immunol. 96, 179–204.
Schatz DG & Yanhong J (2010) Recombination centers and the
orchestration of V(D)J recombination. Nat. Rev. Immunol.
11, 251–263.
Schomchik MJ & Weisel F (2012) Germinal center selection and
development of memory B and plasma cells. Immunol. Rev.
247, 52–63.
Schroeder HW & Cavacini L (2010) Structure and function of
immunoglobulins. J. Aller. Clin. Immunol. 125, S41–S52.
Xu Z, Zan H, Pone EJ et al. (2012) Immunoglobulin class-switch DNA
recombination: induction, targeting and beyond. Nat. Rev. Immunol.
12, 517–531.
T Cells and the MHC
Bjorkman PJ (2006) Finding the groove. Nat. Immunol. 7, 787–789.
Blum JS, Wearsch PA & Cresswell P (2013) Pathways of antigen
processing. Annu. Rev. Immunol. 31, 443–473.
Clambey ET, Davenport B, Kappler JW et al. (2014) Molecules in
medicine mini review: the αβ T cell receptor. J. Mol. Med. 92,
735–741.
Dustin ML (2014) What counts in the immunological synapse. Mol. Cell
54, 255–262.
Ewen CL, Kane KP & Bleackley RC (2012) A quarter century of
granzyme. Cell Death Differ. 19, 28–35.
Hniffa M, Collin M & Ginhoux F (2013) Ontogeny and functional
specialization of dendritic cells in human and mouse. Adv. Immunol.
120, 1–49.
Harwood NE & Batista FD (2010) Early events in B cell activation. Annu.
Rev. Immunol. 28, 185–210.
Hsieh CS, Lee HM & Lio CW (2012) Selection of regulatory T cells in the
thymus. Nat. Rev. Immunol. 10, 157–167.
Huppa JB & Davis MM (2013) The interdisciplinary science of T-cell
recognition. Adv. Immunol. 119, 1–50.
Joffre OP, Segura E, Savina A & Amigorena S (2012) Cross-presentation
by dendritic cells. Nat. Rev. Immunol. 12, 557–569.
Josefowicz SZ, Lu L-F & Rudensky AY (2012) Regulatory T cells:
mechanisms of differentiation and function. Annu. Rev. Immunol.
30, 531–564.
Klein L, Kyewski B, Allen PM & Hogquist KA (2014) Positive and
negative selection of the T cell repertoire: what the thymocytes see
(and don’t see). Nat. Rev. Immunol. 14, 377–391.
Liu K & Nussenzweig MC (2010) Origin and development of dendritic
cells. Immunol. Rev. 234, 45–54.
Mathis D & Benoist C (2009) AIRE. Annu. Rev. Immunol. 27, 287–312.
McDevitt HO (2000) Discovering the role of the major histocompatibility
complex in the immune response. Annu. Rev. Immunol. 18, 1–17.
Ohkura N, Kitagawa Y & Sakagucci S (2013) Development and
maintenance of regulatory T cells. Semin. Immunol. 23, 424–430.
Ramsdell F & Ziegler SF (2014) Fox3P and scurfy: how it all began. Nat.
Rev. Immunol. 14, 343–349.
Rudolph MG, Stanfield RL & Wilson IA (2006) How TCRs bind MHCs,
peptides, and coreceptors. Annu. Rev. Immunol. 24, 419–466.
Schuette V & Burgdorf S (2014) The ins-and-outs of endosomal
antigens for cross presentation. Curr. Opin. Immunol. 26, 63–68.
Shevach EM (2011) Biological functions of regulatory T cells. Adv.
Immunol. 112, 137–176.
Steinman RM (2012) Decisions about dendritic cells: past, present, and
future. Annu. Rev. Immunol. 30, 1–22.
Trombetta ES & Mellman I (2005) Cell biology of antigen processing in
vitro and in vivo. Annu. Rev. Immunol. 23, 975–1028.
Zhu J, Yamane H & Paul WE (2010) Peripheral CD4 + T-cell
differentiation regulated by networks of cytokines and transcription
factors. Annu. Rev. Immunol. 28, 445–489.