13.09.2022 Views

Molecular Biology of the Cell by Bruce Alberts, Alexander Johnson, Julian Lewis, David Morgan, Martin Raff, Keith Roberts, Peter Walter by by Bruce Alberts, Alexander Johnson, Julian Lewis, David Morg

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

298 Chapter 5: DNA Replication, Repair, and Recombination

References

General

Brown TA (2007) Genomes 3. New York: Garland Science.

Friedberg EC, Walker GC, Siede W et al. (2005) DNA Repair and

Mutagenesis. Washington, DC: ASM Press.

Haber JE (2013) Genome Stability: DNA Repair and Recombination.

New York: Garland Science.

Hartwell L, Hood L, Goldberg ML et al. (2010) Genetics: from Genes to

Genomes. Boston: McGraw Hill.

Stent GS (1971) Molecular Genetics: An Introductory Narrative. San

Francisco: WH Freeman.

Watson J, Baker T, Bell S et al. (2013) Molecular Biology of the Gene,

7th ed. Menlo Park, CA: Benjamin Cummings.

The Maintenance of DNA Sequences

Conrad DF, Keebler J, DePristo M et al. (2011) Variation in genomewide

mutation rates within and between human families.

Nat. Genet. 43, 712–714.

Catarina D & Eichler EE (2013) Properties and rates of germline

mutations in humans. Trends Genet. 29, 575–584.

Cooper GM, Brudno M, Stone ES et al. (2004) Characterization of

evolutionary rates and constraints in three mammalian genomes.

Genome Res. 14, 539–548.

Hedges SB (2002) The origin and evolution of model organisms. Nat.

Rev. Genet. 3, 838–849.

King MC & Wilson AC (1965) Evolution at two levels in humans and

chimpanzees. Science 188, 107–116.

DNA Replication Mechanisms

Alberts B (1998) The cell as a collection of protein machines: preparing

the next generation of molecular biologists. Cell 92, 291–294.

Kelch BA, Makino DL, O’Donnell M et al. (2011) How a DNA

polymerase clamp loader opens a sliding clamp. Science 334,

1675–1680.

Kornberg A (1960) Biological synthesis of DNA. Science 131, 1503–

1508.

Li JJ & Kelly TJ (1984) SV40 DNA replication in vitro. Proc. Natl. Acad.

Sci. USA 81, 6973–6977.

Meselson M & Stahl FW (1958) The replication of DNA in E. coli.

Proc. Natl. Acad. Sci. USA 44, 671–682.

Modrich P & Lahue R (1996) Mismatch repair in replication fidelity,

genetic recombination, and cancer biology. Annu. Rev. Biochem.

65, 101–133.

O’Donnell M, Langston L & Stillman B (2013) Principals and concepts

of DNA replication in Bacteria, Archaea, and Eukarya. Cold Spring

Harb. Lab. Perspect. Biol. 195, 1231–1240.

Okazaki R, Okazaki T, Sakabe K et al. (1968) Mechanism of DNA chain

growth. I. Possible discontinuity and unusual secondary structure of

newly synthesized chains. Proc. Natl. Acad. Sci. USA 59, 598–605.

Raghuraman MK, Winzeler EA, Collingwood D et al. (2001) Replication

dynamics of the yeast genome. Science 294, 115–121.

Rao PN & Johnson RT (1970) Mammalian cell fusion: studies on the

regulation of DNA synthesis and mitosis. Nature 225, 159.

Vos SM, Tretter EM, Schmidt BH et al. (2011) All tangled up: how cells

direct, manage and exploit topoisomerase function. Nat. Rev. Mol.

Cell Biol. 12, 827–841.

The Initiation and Completion of DNA Replication in

Chromosomes

Chan SR & Blackburn EH (2004) Telomeres and telomerase. Philos.

Trans. R. Soc. Lond. B Bio. Sci. 359, 109–121.

Gilbert DM (2010) Evaluating genome-scale approaches to eukaryotic

DNA replication. Nat. Rev. Genet. 11, 673–684.

deLang T (2009) How telomeres solve the end-protection problem.

Science 326, 948–952.

Mechali M (2010) Eukaryotic DNA replication origins: many choices for

appropriate answers. Nat. Rev. Mol. Cell Biol. 11, 728–738.

Nandakumar J & Cech T (2013) Finding the end: recruitment of

telomerase to telomeres. Nat. Rev. Mol. Cell Biol. 14, 69–82.

DNA Repair

Goodman MF & Woodgate, R (2013) Translesion DNA polymerases.

Cold Spring Harb. Perspect. Biol. 5, a010363.

Hanawalt PC & Spivak G (2008) Transcription-coupled DNA repair:

two decades of progress and surprises. Nat. Rev. Mol. Cell Biol.

9, 958–970.

Lindahl T (1993) Instability and decay of the primary structure of DNA.

Nature 362, 709–715.

Malkova A & Haber JE (2012) Mutations arising during repair of

chromosome breaks. Annu. Rev. Genet. 46, 455–473.

Prakash S, Johnson RE & Prakash L (2005) Eukaryotic translesion

synthesis DNA polymerases: specificity of structure and function.

Annu. Rev. Biochem. 74, 317–353.

Reardon JT & Sancar A (2005) Nucleotide excision repair. Prog. Nucleic

Acid Res. Mol. Biol. 79, 183–235.

Homologous Recombination

Chen Z, Yang H & Pavletich NP (2008) Mechanism of homologous

recombination from the RecA-ssDNA/dsDNA structures. Nature

453, 489–494.

Cox MM (2001) Historical overview: searching for replication help in all

of the rec places. Proc. Natl. Acad. Sci. USA 98, 8173–8180.

Heyer WD, Ehmsen KT & Liu J (2010) Regulation of homologous

recombination in eukaryotes. Annu. Rev. Genet. 44, 113–139.

Holliday R (1990) The history of the DNA heteroduplex. BioEssays

12, 133–142.

Hunter N (2006) Meiotic recombination. In Topics in Current Genetics,

Molecular Genetics of Recombination, Aguilera A & Rothstein R

(eds), pp. 381–422. Springer-Verlag: Heidelberg.

de Massy B (2013) Initiation of meiotic recombination: how and where?

Conservation and specificities among eukaryotes. Annu. Rev.

Genet. 47, 563–599.

Michel B, Gromponee G, Florès MJ & Bidnenko V (2004) Multiple

pathways process stalled replication forks. Proc. Natl. Acad. Sci.

USA 101, 12783–12788.

Moynahan ME & Jasin M (2010) Mitotic homologous recombination

maintains genomic stability and suppresses tumorigenesis. Nat.

Rev. Mol. Cell Biol. 11, 196–207.

Szostak JW, Orr-Weaver TK, Rothstein RJ et al. (1983) The doublestrand

break repair model for recombination. Cell 33, 25–35.

West SC (2003) Molecular views of recombination proteins and their

control. Nat. Rev. Mol. Cell Biol. 4(6), 435–445.

Yeeles JY, Poli J, Marians KJ et al. (2013) Rescuing stalled or damaged

replication forks. Cold Spring Harb. Perspect. Biol. 5, a012815.

Zickler D & Kleckner N (1999) Meiotic chromosomes: integrating

structure and function. Annu. Rev. Genet. 33, 603–754.

Transposition and Conservative Site-specific

Recombination

Comfort NC (2001) From controlling elements to transposons:

Barbara McClintock and the Nobel Prize. Trends Biochem. Sci.

26, 454–457.

Grindley ND, Whiteson KL & Rice PA (2006) Mechanisms of sitespecific

recombination. Annu. Rev. Biochem. 75, 567–605.

Huang, CR, Burns KH & Boeke JD (2012) Active transposition in

genomes. Annu. Rev. Genet. 46, 651–675.

Varmus H (1988) Retroviruses. Science 240, 1427–1435.

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!