MDCK-MRP2 - Dkfz

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Forschungsschwerpunkt B
Funktionelle und Strukturelle Genomforschung
[6] F. Bestvater, T.A. Knoch, J. Langowski, E. Spiess: GFP-Walking:
Artificial construct conversions caused by simultaneous
cotransfection. (2002) BioTechniques 32(4), 844-55
[7] Dekker, J.*, Rippe, K., Dekker, M.* & Kleckner, N.* (2002).
Capturing Chromosome Conformation. Science 295(5558), 1306-
1311.
[8] I. Hofmann, H. Winter, N. Mücke, J. Langowski, J. Schweizer:
The in vitro assembly of hair follicle keratins: Comparision of cortex
and companion layer keratins. (2002) Biol. Chem. 383(9),
1373-81
[9] M. Gumbel, R. Grebe, M. Knapp-Mohammady, G. M.
Ullmann*, J. Langowski: Modellierung biologischer Prozesse. In:
Handbuch der Medizinischen Informatik (T. Lehmann & E. Meyer
zu Bexten, eds.) Hanser, München 2002.
[10] *Gil-Parrado, S., *Fernandez-Montalvan, A., *Assfalg-
Machleidt, I., *Popp, O., Bestvater, F., *Holloschi, A., Knoch, T.
A., *Auerswald, E. A., *Welsh, K., Reed, J. C., *Fritz, H.,
*Fuentes-Prior, P., Spiess, E., *Salvesen, G. S. & *Machleidt, W.
(2002). Ionomycin-activated calpain triggers apoptosis: A probable
role for Bcl- 2 family members. J Biol Chem 8, 8.
[11] G. Westphal*, S. van den Berg-Stein*, K. Braun, T.A.
Knoch, M. Dümmerling*, J. Langowski, J. Debus, E. Friedrich*:
Detection of the NGF receptors TrkaA and p75NTR and effect of
NGF on the growth characteristics of human tumor cell lines.
(2002) J. Exp. Clin. Cancer Res., 21(2), 255-67
[12] K. Braun, P. Peschke, R. Pipkorn, S. Lampel*, M.
Wachsmuth, W. Waldeck, E. Friedrich*, J. Debus: A biological
transporter for the delivery of peptide nucleic acids (PNAs) to
the nuclear compartment of living cells. (2002) J. Mol. Biol.,
318(2):237-43
[13] Strunz AM, Peschke P, Waldeck W, *Ehemann V, Kissel M,
Debus J.: Preferential radiosensitization in p53-mutated human
tumour cell lines by pentoxifylline-mediated disruption of the G2/
M checkpoint control. (2002) Int J Radiat Biol. 78(8):721-32
[14] M. Wachsmuth, T. Weidemann, G. Müller, W. Waldeck, J.
Langowski: Analyzing intracellular binding and diffusion with continuous
fluorescence photobleaching. (2003) Biophys. J. 84,
3353-3363
[15] T.P. O’Brien*, C. Cremer*, M. Grunze*, B.B. Knowles*, J.
Langowski, J. McNally*, T. Pederson*, J. Politz*, A. Pombo*, P.
Schmidt*, R. van Driel*: Functional Architecture of the Nuclear
Genome: Towards establishing the Genome Architecture Consortium.
(2003) Genome Res. 13, 1029-1041
[16] K. Módos*, R. Galántai*, I. Bardos-Nagy*, M. Wachsmuth,
K. Tóth, J. Fidy*, J. Langowski: Maximum-entropy decomposition
of fluorescence correlation spectroscopy data: application to liposome-human
serum albumin association. (2003) Eur. Biophys.
J., published online 30.08.2003, DOI: 10.1007/s00249-003-
0343-6
[17] F. Lankaš, J. Šponer*, J. Langowski, T.E. Cheatham III*:
DNA base-pair step deformability inferred from molecular dynamics
simulations. (2003) Biophys. J., 85(5), 2872-2883
[18] J. F. Kepert*, K. Fejes Tóth*, M. Caudron*, N. Mücke, J.
Langowski, K. Rippe: Conformation of reconstituted mononucleosomes
determined by scanning force microscopy in air and in
aqueous solution. (2003) Biophys. J., 85(6), 4012-22
[19] T. Weidemann, M. Wachsmuth, T.A. Knoch, G. Müller, W.
Waldeck, J. Langowski; Counting nucleosomes in living cells with
a combination of fluorescence correlation spectroscopy and confocal
imaging. (2003) J. Mol. Biol. 334(2), 229-240.
[20] M. Bussiek, N. Mücke, J. Langowski: Polylysine-coated mica
can be used to observe systematic changes in the supercoiled
DNA conformation by scanning force microscopy in solution.
(2003) Nucl. Acids Res., 31(22), e137
[21] M. Egyeki, G. Turoczy*, Z. Majer*, K. Tóth, A. Fekete*, P.
Maillard*, G. Csik*: Photosensitized inactivation of T7 phage as
surrogate of non-enveloped DNA viruses: efficiency and mechanism
of action. (2003) Biochim Biophys Acta 1624, 115-24
Abteilung B040
Biophysik der Makromoleküle
DKFZ 2004: Wissenschaftlicher Ergebnisbericht 2002 - 2003
[22] M. Egyeki, G. Turoczy*, K. Tóth, A. Fekete*, P. Maillard*,
G. Csik*: Photodynamic inactivation of porphyrin sensitized T7
phages: efficiency and mechanism of action. (2003) Acta Pharm
Hung 73(2): 97-102.
[23] S. Heckl, R. Pipkorn, W. Waldeck, H. Spring, J. Jenne, C.-
W. von der Lieth, H. Corban-Wilhelm, J. Debus, K. Braun. Intracellular
Visualization of Prostate Cancer using Magnetic Resonance
Imaging. (2003) Cancer Res. 63, 4766-72
[24] *Gil-Parrado, S., *Popp, O., Knoch, T. A., Zahler, S.,
Bestvater, F., Felgentrager, M., *Holloschi, A., *Fernandez-
Montalvan, A., *Auerswald, E. A., *Fritz, H., *Fuentes-Prior, P.,
*Machleidt, W. & Spiess, E.: Subcellular localization and in vivo
subunit interactions of ubiquitous mu-calpain (2003) J Biol Chem
278, 16336-46.
[25] Braun, K., Wolber, G., Waldeck, W., Pipkorn, R., Jenne, J.,
Rastert, R., *Ehemann, V., Eisenmenger, A., Corban-Wilhelm, H.,
Braun, I., Heckl, S. & Debus, J.: The enhancement of neutron
irradiation of HeLa-S cervix carcinoma cells by cell-nucleus-addressed
deca-p-boronophenylalanine. (2003) Eur J Med Chem
38, 587-95.
[26] Perraud, A. L.*, Shen, B.*, Dunn, C. A.*, Rippe, K., Smith,
M. K.*, Bessman, M. J.*, Stoddard, B. L.* & Scharenberg, A.
M.*: NUDT9, a member of the Nudix hydrolase family, is an evolutionarily
conserved mitochondrial ADP-ribose pyrophosphatase.
(2003) J Biol Chem 278, 1794-801.
[27] N. Mücke, L. Kreplak*, R. Kirmse, T. Wedig, H. Herrmann,
U. Aebi*, J. Langowski: Assessing the Flexibility of Intermediate
Filaments by Atomic Force Microscopy. (2004) J. Mol. Biol.
335(5), 1241-1250
[28] J. Langowski, H. Schiessel*: Theory and computational
modeling of the 30 nm chromatin fiber. In: Chromatin Structure:
State of the Art, eds. S. Leuba & J. Zlatanova, 2004, Elsevier,
Amsterdam.
[29] J. Langowski: Melting Under Stress (New and Notable Comment
on article “Monte Carlo Simulations of Locally Melted Supercoiled
DNAs in 20mM Ionic Strength” by Sucato et al. in the same
journal). (2004) Biophys. J., in press
[30] F. Lankaš, J. Šponer*, J. Langowski, T.E. Cheatham III*:
DNA deformability at the base-pair level. (2004) J. Am. Chem.
Soc.,126(13) 4124-4125
[31] N. Mücke, T. Wedig, A. Bürer*, L. N. Marekov*, P. M.
Steinert*, J. Langowski, U. Aebi*, H. Herrmann: Molecular and
Biophysical Properties of Assembly-Starter-Units of Human
Vimentin. (2004) J. Mol. Biol., in press